RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 SLC44A5Q8NCS7 719 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 FRAT1Q92837 279 aaPredicted RBP13.41□□□□□ -0.26
VPS4B-202ENST00000588059 LENG1Q96BZ8 264 aaPredicted RBP13.41□□□□□ -0.26
VPS4B-202ENST00000588059 ZNF576Q9H609 170 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 TMEM39AQ9NV64 488 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 MAGEB6P1A0A0J9YX57 407 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 ADAMTS4O75173 837 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 PGK2P07205 417 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 FAAP100Q0VG06 881 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 ANKRD33Q7Z3H0 272 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 SIAH1Q8IUQ4 282 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 SPICE1Q8N0Z3 855 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 TIFAQ96CG3 184 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 MMP19Q99542 508 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 TINF2Q9BSI4 451 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 C1orf115Q9H7X2 142 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 MCM9Q9NXL9 1143 aa13.4□□□□□ -0.26
VPS4B-202ENST00000588059 WDR46O15213 610 aaKnown RBP13.39□□□□□ -0.27
VPS4B-202ENST00000588059 SLC25A27O95847 323 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 ZNF865P0CJ78 1059 aaPredicted RBP13.39□□□□□ -0.27
VPS4B-202ENST00000588059 CYP2D6P10635 497 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 AKR1A1P14550 325 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 ZNF792Q3KQV3 632 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 SAMD1Q6SPF0 538 aaPredicted RBP13.39□□□□□ -0.27
VPS4B-202ENST00000588059 TOX2Q96NM4 488 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.39□□□□□ -0.279e-7■□□□□ 10.7
VPS4B-202ENST00000588059 CRNKL1Q9BZJ0 848 aaKnown RBP13.39□□□□□ -0.27
VPS4B-202ENST00000588059 VCPKMTQ9H867 229 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 RAPGEFL1Q9UHV5 662 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 TBX21Q9UL17 535 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 DIS3Q9Y2L1 958 aaKnown RBP13.39□□□□□ -0.27
VPS4B-202ENST00000588059 TMX2Q9Y320 296 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 GBF1Q92538 1859 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 SYNRGQ9UMZ2 1314 aa13.39□□□□□ -0.27
VPS4B-202ENST00000588059 NCOR1O75376 2440 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 DCDC2CA8MYV0 355 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 AKR1B1P15121 316 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 PDE6AP16499 860 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 ACLYP53396 1101 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 ICA1Q05084 483 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 RIOX2Q8IUF8 465 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 SDR42E1Q8WUS8 393 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 TSEN34Q9BSV6 310 aaKnown RBP13.38□□□□□ -0.27
VPS4B-202ENST00000588059 SH2D4AQ9H788 454 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 ARHGEF10LQ9HCE6 1279 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 DCP1AQ9NPI6 582 aaPredicted RBP13.38□□□□□ -0.27
VPS4B-202ENST00000588059 STARD7Q9NQZ5 370 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 FBXO28Q9NVF7 368 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 ADAMTS5Q9UNA0 930 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 MCM3APO60318 1980 aa13.38□□□□□ -0.27
VPS4B-202ENST00000588059 TIMP1P01033 207 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 PBX2P40425 430 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 KCTD2Q14681 263 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 AKNAD1Q5T1N1 836 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 RASIP1Q5U651 963 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 LCORLQ8N3X6 602 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 ATXN2LQ8WWM7 1075 aaKnown RBP13.37□□□□□ -0.27
VPS4B-202ENST00000588059 DYNLL2Q96FJ2 89 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 GAS2L1Q99501 681 aaPredicted RBP13.37□□□□□ -0.27
VPS4B-202ENST00000588059 PBX4Q9BYU1 374 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 THEGQ9P2T0 379 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 SWAP70Q9UH65 585 aa13.37□□□□□ -0.27
VPS4B-202ENST00000588059 ZNF214Q9UL59 606 aaPredicted RBP13.37□□□□□ -0.27
VPS4B-202ENST00000588059 TCRBV5S4A2TA0A5A2 114 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 MOXD2PA6NHM9 499 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 GRXCR1A8MXD5 290 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 TMEM240Q5SV17 173 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 SLC9C2Q5TAH2 1124 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 CCSAPQ6IQ19 270 aaPredicted RBP13.36□□□□□ -0.27
VPS4B-202ENST00000588059 MFSD5Q6N075 450 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 C16orf59Q7L2K0 433 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 AACSQ86V21 672 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 KLHDC9Q8NEP7 349 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 REPS2Q8NFH8 660 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 NUP133Q8WUM0 1156 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 PPM1EQ8WY54 764 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 ASB2Q96Q27 587 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 PRDM12Q9H4Q4 367 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 CNPY2Q9Y2B0 182 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 GREB1LQ9C091 1923 aaPredicted RBP13.36□□□□□ -0.27
VPS4B-202ENST00000588059 CHD9Q3L8U1 2897 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 ZNF532Q9HCE3 1301 aa13.36□□□□□ -0.27
VPS4B-202ENST00000588059 MYADML2A6NDP7 307 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 SMIM22K7EJ46 135 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 VWA5AO00534 786 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 STAT3P40763 770 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 PPIGQ13427 754 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS4B-202ENST00000588059 TTF1Q15361 905 aaPredicted RBP13.35□□□□□ -0.27
VPS4B-202ENST00000588059 KCNA10Q16322 511 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 ZKSCAN2Q63HK3 967 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 ADAMTS19Q8TE59 1207 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 PPP1R9AQ9ULJ8 1098 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 MROH7Q68CQ1 1323 aa13.35□□□□□ -0.27
VPS4B-202ENST00000588059 SNAI1O95863 264 aaPredicted RBP13.34□□□□□ -0.27
VPS4B-202ENST00000588059 CST5P28325 142 aaPredicted RBP13.34□□□□□ -0.27
VPS4B-202ENST00000588059 COPB2P35606 906 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 CDK7P50613 346 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 IRX5P78411 483 aaPredicted RBP13.34□□□□□ -0.27
VPS4B-202ENST00000588059 ADGRE1Q14246 886 aa13.34□□□□□ -0.27
VPS4B-202ENST00000588059 CCDC174Q6PII3 467 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms