RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 DDX20Q9UHI6 824 aaKnown RBP17.15■□□□□ 0.34
VMP1-206ENST00000587945 BAZ2AQ9UIF9 1905 aaKnown RBP17.14■□□□□ 0.33
VMP1-206ENST00000587945 PATL2C9JE40 543 aaKnown RBP17.14■□□□□ 0.33
VMP1-206ENST00000587945 GNAT2P19087 354 aa17.14■□□□□ 0.33
VMP1-206ENST00000587945 MX1P20591 662 aa17.14■□□□□ 0.33
VMP1-206ENST00000587945 IFNL3Q8IZI9 196 aa17.14■□□□□ 0.33
VMP1-206ENST00000587945 PPP1R9AQ9ULJ8 1098 aa17.14■□□□□ 0.33
VMP1-206ENST00000587945 ADAMTS5Q9UNA0 930 aa17.14■□□□□ 0.33
VMP1-206ENST00000587945 ROBO3Q96MS0 1386 aa17.14■□□□□ 0.33
VMP1-206ENST00000587945 VWA5AO00534 786 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 CYBAP13498 195 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 LRRC26Q2I0M4 334 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 LRRFIP1Q32MZ4 808 aaKnown RBP17.13■□□□□ 0.33
VMP1-206ENST00000587945 PRAMEF19Q5SWL8 479 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 ANKRD45Q5TZF3 282 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 ANO1Q5XXA6 986 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 OLFML2BQ68BL8 750 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 NYAP2Q9P242 653 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 CLIP2Q9UDT6 1046 aa17.13■□□□□ 0.33
VMP1-206ENST00000587945 IGKV6D-41A0A0C4DH26 115 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 F5H6K3 240 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 SLC25A27O95847 323 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 NDUFB10O96000 172 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 FCER1AP12319 257 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 KLRC3Q07444 240 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 ZMYM1Q5SVZ6 1142 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 CCDC129Q6ZRS4 1044 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 ZNF444Q8N0Y2 327 aaPredicted RBP17.12■□□□□ 0.33
VMP1-206ENST00000587945 ABRAQ8N0Z2 381 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 REPS2Q8NFH8 660 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 YTHDC1Q96MU7 727 aaKnown RBP17.12■□□□□ 0.33
VMP1-206ENST00000587945 GDF15Q99988 308 aa17.12■□□□□ 0.33
VMP1-206ENST00000587945 SENP6Q9GZR1 1112 aaPredicted RBP17.12■□□□□ 0.33
VMP1-206ENST00000587945 PGK2P07205 417 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 STAT3P40763 770 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 RIOX2Q8IUF8 465 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 CEP95Q96GE4 821 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 MAML3Q96JK9 1138 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 MMP19Q99542 508 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 SLF1Q9BQI6 1058 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 NACAP1Q9BZK3 213 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 SLC5A4Q9NY91 659 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 ZNF214Q9UL59 606 aaPredicted RBP17.11■□□□□ 0.33
VMP1-206ENST00000587945 SALL3Q9BXA9 1300 aa17.11■□□□□ 0.33
VMP1-206ENST00000587945 SZT2Q5T011 3432 aa17.1■□□□□ 0.33
VMP1-206ENST00000587945 SOX1O00570 391 aaPredicted RBP17.1■□□□□ 0.33
VMP1-206ENST00000587945 MSCO60682 206 aa17.1■□□□□ 0.33
VMP1-206ENST00000587945 MAGEA10P43363 369 aaPredicted RBP17.1■□□□□ 0.33
VMP1-206ENST00000587945 ATN1P54259 1190 aaPredicted RBP17.1■□□□□ 0.33
VMP1-206ENST00000587945 FAM47AQ5JRC9 791 aa17.1■□□□□ 0.33
VMP1-206ENST00000587945 LRRC47Q8N1G4 583 aaKnown RBP17.1■□□□□ 0.33
VMP1-206ENST00000587945 NAPBQ9H115 298 aa17.1■□□□□ 0.33
VMP1-206ENST00000587945 MTMR4Q9NYA4 1195 aa17.1■□□□□ 0.33
VMP1-206ENST00000587945 ZBTB47Q9UFB7 747 aaPredicted RBP17.1■□□□□ 0.33
VMP1-206ENST00000587945 RLFQ13129 1914 aa17.09■□□□□ 0.33
VMP1-206ENST00000587945 FOXP2O15409 715 aa17.09■□□□□ 0.33
VMP1-206ENST00000587945 PPARAQ07869 468 aa17.09■□□□□ 0.33
VMP1-206ENST00000587945 GJC2Q5T442 439 aaPredicted RBP17.09■□□□□ 0.33
VMP1-206ENST00000587945 ZNF287Q9HBT7 754 aa17.09■□□□□ 0.33
VMP1-206ENST00000587945 A0A0G2JMZ2 1700 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 A0A1W2PPC1 479 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 DNM1LO00429 736 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 SEPT4O43236 478 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 MYCNP04198 464 aaPredicted RBP17.08■□□□□ 0.32
VMP1-206ENST00000587945 BMP8BP34820 402 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 SLC4A3P48751 1232 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 KCTD2Q14681 263 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 MKL1Q969V6 931 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 CHMP4CQ96CF2 233 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 LRCH3Q96II8 777 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 INCENPQ9NQS7 918 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 RIPK3Q9Y572 518 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 MYH7P12883 1935 aa17.08■□□□□ 0.32
VMP1-206ENST00000587945 TTLL1O95922 423 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 TSPY3P0CV98 308 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 TSPY8P0CW00 308 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 TAL1P17542 331 aaPredicted RBP17.07■□□□□ 0.32
VMP1-206ENST00000587945 PDE1AP54750 535 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 TFAP4Q01664 338 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 PDE4BQ07343 736 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 HDAC1Q13547 482 aaPredicted RBP17.07■□□□□ 0.32
VMP1-206ENST00000587945 ZNF792Q3KQV3 632 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 VPS53Q5VIR6 699 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 SNRNP48Q6IEG0 339 aaKnown RBP17.07■□□□□ 0.32
VMP1-206ENST00000587945 CPXCR1Q8N123 301 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 PRPF38AQ8NAV1 312 aaKnown RBP17.07■□□□□ 0.32
VMP1-206ENST00000587945 NEDD1Q8NHV4 660 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 KIFC2Q96AC6 838 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 TEX13BQ9BXU2 312 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 ALPK3Q96L96 1907 aa17.07■□□□□ 0.32
VMP1-206ENST00000587945 SLC3A2P08195 630 aaKnown RBP17.06■□□□□ 0.32
VMP1-206ENST00000587945 MDM2Q00987 491 aaPredicted RBP17.06■□□□□ 0.32
VMP1-206ENST00000587945 CTDSPL2Q05D32 466 aa17.06■□□□□ 0.32
VMP1-206ENST00000587945 SLFN13Q68D06 897 aa17.06■□□□□ 0.32
VMP1-206ENST00000587945 ARRDC4Q8NCT1 418 aa17.06■□□□□ 0.32
VMP1-206ENST00000587945 TINF2Q9BSI4 451 aa17.06■□□□□ 0.32
VMP1-206ENST00000587945 RAVER2Q9HCJ3 691 aaKnown RBP17.06■□□□□ 0.32
VMP1-206ENST00000587945 LAMA3Q16787 3333 aa17.06■□□□□ 0.32
VMP1-206ENST00000587945 ZBED4O75132 1171 aa17.05■□□□□ 0.32
VMP1-206ENST00000587945 COPB2P35606 906 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms