RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 CCDC144CPQ8IYA2 1237 aa21.35■■□□□ 1.01
RFFL-211ENST00000584541 SPICE1Q8N0Z3 855 aa21.35■■□□□ 1.01
RFFL-211ENST00000584541 FANCBQ8NB91 859 aa21.35■■□□□ 1.01
RFFL-211ENST00000584541 EMILIN3Q9NT22 766 aa21.35■■□□□ 1.01
RFFL-211ENST00000584541 RBM28Q9NW13 759 aaKnown RBP21.35■■□□□ 1.01
RFFL-211ENST00000584541 SLC10A3P09131 477 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 SNHG28P0DPA3 235 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 CETPP11597 493 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 BMP3P12645 472 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 GNAQP50148 359 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 MKRN3Q13064 507 aaKnown RBP21.34■■□□□ 1.01
RFFL-211ENST00000584541 BECN1Q14457 450 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 ME3Q16798 604 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 DEFB115Q30KQ5 88 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 GADL1Q6ZQY3 521 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 PROCA1Q8NCQ7 364 aaPredicted RBP21.34■■□□□ 1.01
RFFL-211ENST00000584541 NID2Q14112 1375 aa21.34■■□□□ 1.01
RFFL-211ENST00000584541 K7ELQ4 463 aaPredicted RBP21.33■■□□□ 1.01
RFFL-211ENST00000584541 DHX16O60231 1041 aaKnown RBP21.33■■□□□ 1.01
RFFL-211ENST00000584541 PFKFB2O60825 505 aa21.33■■□□□ 1.01
RFFL-211ENST00000584541 CCT2P78371 535 aaKnown RBP21.33■■□□□ 1.01
RFFL-211ENST00000584541 HPS5Q9UPZ3 1129 aa21.33■■□□□ 1.01
RFFL-211ENST00000584541 RBM19Q9Y4C8 960 aaKnown RBP21.33■■□□□ 1.01
RFFL-211ENST00000584541 FRMPD2Q68DX3 1309 aaPredicted RBP21.32■■□□□ 1
RFFL-211ENST00000584541 RASSF10A6NK89 507 aa21.32■■□□□ 1
RFFL-211ENST00000584541 VCAM1P19320 739 aa21.32■■□□□ 1
RFFL-211ENST00000584541 ZNF543Q08ER8 600 aa21.32■■□□□ 1
RFFL-211ENST00000584541 KIAA1755Q5JYT7 1200 aa21.32■■□□□ 1
RFFL-211ENST00000584541 FAM83BQ5T0W9 1011 aa21.32■■□□□ 1
RFFL-211ENST00000584541 CPLX2Q6PUV4 134 aaKnown RBP21.32■■□□□ 1
RFFL-211ENST00000584541 KCTD1Q719H9 257 aa21.32■■□□□ 1
RFFL-211ENST00000584541 TMX3Q96JJ7 454 aa21.32■■□□□ 1
RFFL-211ENST00000584541 LZTS2Q9BRK4 669 aa21.32■■□□□ 1
RFFL-211ENST00000584541 GPCPD1Q9NPB8 672 aa21.32■■□□□ 1
RFFL-211ENST00000584541 CCL15-CCL14A0A0B4J2E2 113 aa21.31■■□□□ 1
RFFL-211ENST00000584541 PALM3A6NDB9 673 aaPredicted RBP21.31■■□□□ 1
RFFL-211ENST00000584541 MANSC4A6NHS7 340 aaPredicted RBP21.31■■□□□ 1
RFFL-211ENST00000584541 CPLX1O14810 134 aa21.31■■□□□ 1
RFFL-211ENST00000584541 LARGE1O95461 756 aa21.31■■□□□ 1
RFFL-211ENST00000584541 IKQ13123 557 aaPredicted RBP21.31■■□□□ 1
RFFL-211ENST00000584541 PABPC4Q13310 644 aaKnown RBP eCLIP21.31■■□□□ 1
RFFL-211ENST00000584541 DGKZQ13574 1117 aa21.31■■□□□ 1
RFFL-211ENST00000584541 CCL15Q16663 113 aa21.31■■□□□ 1
RFFL-211ENST00000584541 GTF3C6Q969F1 213 aa21.31■■□□□ 1
RFFL-211ENST00000584541 NUP88Q99567 741 aaPredicted RBP21.31■■□□□ 1
RFFL-211ENST00000584541 TANGO6Q9C0B7 1094 aa21.31■■□□□ 1
RFFL-211ENST00000584541 RPAP3Q9H6T3 665 aaPredicted RBP21.31■■□□□ 1
RFFL-211ENST00000584541 MAD2L2Q9UI95 211 aa21.31■■□□□ 1
RFFL-211ENST00000584541 MYH6P13533 1939 aa21.31■■□□□ 1
RFFL-211ENST00000584541 KLRF2D3W0D1 207 aa21.3■■□□□ 1
RFFL-211ENST00000584541 GOLGA8HP0CJ92 632 aa21.3■■□□□ 1
RFFL-211ENST00000584541 SCRN1Q12765 414 aa21.3■■□□□ 1
RFFL-211ENST00000584541 GRM1Q13255 1194 aa21.3■■□□□ 1
RFFL-211ENST00000584541 RASGRP2Q7LDG7 609 aa21.3■■□□□ 1
RFFL-211ENST00000584541 FAM160B2Q86V87 743 aa21.3■■□□□ 1
RFFL-211ENST00000584541 NECAB1Q8N987 351 aa21.3■■□□□ 1
RFFL-211ENST00000584541 CHURC1Q8WUH1 139 aa21.3■■□□□ 1
RFFL-211ENST00000584541 FEM1BQ9UK73 627 aa21.3■■□□□ 1
RFFL-211ENST00000584541 AGTPBP1Q9UPW5 1226 aa21.3■■□□□ 1
RFFL-211ENST00000584541 PARP14Q460N5 1801 aa21.29■■□□□ 1
RFFL-211ENST00000584541 FAM155AB1AL88 458 aaPredicted RBP21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L15C9J2P7 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L13C9JLJ4 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 TMEM232C9JQI7 657 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L11C9JVI0 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L18D6R9N7 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L22D6RA61 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L17D6RBQ6 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L19D6RCP7 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L20D6RJB6 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 CDKL5O76039 1030 aa21.29■■□□□ 1
RFFL-211ENST00000584541 CDC27P30260 824 aa21.29■■□□□ 1
RFFL-211ENST00000584541 STAT2P52630 851 aa21.29■■□□□ 1
RFFL-211ENST00000584541 USP17L24Q0WX57 530 aa21.29■■□□□ 1
RFFL-211ENST00000584541 CYP4F22Q6NT55 531 aa21.29■■□□□ 1
RFFL-211ENST00000584541 CCDC83Q8IWF9 413 aa21.29■■□□□ 1
RFFL-211ENST00000584541 STAG2Q8N3U4 1231 aa21.29■■□□□ 1
RFFL-211ENST00000584541 MS4A4AQ96JQ5 239 aa21.29■■□□□ 1
RFFL-211ENST00000584541 NCOA5Q9HCD5 579 aaKnown RBP21.29■■□□□ 1
RFFL-211ENST00000584541 ADD1P35611 737 aaKnown RBP21.28■■□□□ 1
RFFL-211ENST00000584541 INHBEP58166 350 aa21.28■■□□□ 1
RFFL-211ENST00000584541 SREBF2Q12772 1141 aa21.28■■□□□ 1
RFFL-211ENST00000584541 NOGQ13253 232 aa21.28■■□□□ 1
RFFL-211ENST00000584541 TMTC3Q6ZXV5 915 aa21.28■■□□□ 1
RFFL-211ENST00000584541 CAPNS2Q96L46 248 aa21.28■■□□□ 1
RFFL-211ENST00000584541 PLA2G6O60733 806 aa21.27■■□□□ 1
RFFL-211ENST00000584541 FLOT1O75955 427 aa21.27■■□□□ 1
RFFL-211ENST00000584541 SMARCA1P28370 1054 aa21.27■■□□□ 1
RFFL-211ENST00000584541 TREML2Q5T2D2 321 aa21.27■■□□□ 1
RFFL-211ENST00000584541 TTBK2Q6IQ55 1244 aa21.27■■□□□ 1
RFFL-211ENST00000584541 FAM217BQ9NTX9 383 aaPredicted RBP21.27■■□□□ 1
RFFL-211ENST00000584541 TESPA1A2RU30 521 aaPredicted RBP21.26■□□□□ 0.99
RFFL-211ENST00000584541 PLEKHA8P1O95397 391 aa21.26■□□□□ 0.99
RFFL-211ENST00000584541 HSP90AA1P07900 732 aaKnown RBP21.26■□□□□ 0.99
RFFL-211ENST00000584541 OSBPP22059 807 aa21.26■□□□□ 0.99
RFFL-211ENST00000584541 HOXA7P31268 230 aaPredicted RBP21.26■□□□□ 0.99
RFFL-211ENST00000584541 IRX3P78415 501 aaPredicted RBP21.26■□□□□ 0.99
RFFL-211ENST00000584541 MOGSQ13724 837 aa21.26■□□□□ 0.99
RFFL-211ENST00000584541 BTNL9Q6UXG8 535 aa21.26■□□□□ 0.99
RFFL-211ENST00000584541 CATSPERGQ6ZRH7 1159 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms