RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 DUSP4Q13115 394 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 IRF2BP1Q8IU81 584 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 ANKS4BQ8N8V4 417 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 SYTL5Q8TDW5 730 aaPredicted RBP7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 GIPC2Q8TF65 315 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 LINC01599Q8WXQ3 324 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 ZNF512BQ96KM6 892 aaPredicted RBP7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 MCOLN1Q9GZU1 580 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 CWC22Q9HCG8 908 aaKnown RBP7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 UBP1Q9NZI7 540 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 ROBO2Q9HCK4 1378 aa7.33□□□□□ -1.24
SMCHD1-208ENST00000583344 MYOCOSA0A1B0GUC4 107 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 NOTOA8MTQ0 251 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 ATE1O95260 518 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 CHRNEQ04844 493 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 SEZ6Q53EL9 994 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 NBPF12Q5TAG4 269 aaPredicted RBP7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 RNF111Q6ZNA4 994 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 GK5Q6ZS86 529 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 SPPL2CQ8IUH8 684 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 USHBP1Q8N6Y0 703 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 SHISA4Q96DD7 197 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 TCTN2Q96GX1 697 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 ZNF281Q9Y2X9 895 aa7.32□□□□□ -1.24
SMCHD1-208ENST00000583344 PDE6BP35913 854 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 LINC00310P59036 64 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 CLCQ05315 142 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 MRPL58Q14197 206 aaKnown RBP7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 NBPF9Q3BBW0 867 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 ZPBP2Q6X784 338 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 WAPLQ7Z5K2 1190 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 SIRT2Q8IXJ6 389 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 ENOX1Q8TC92 643 aaKnown RBP7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 ANTXR1Q9H6X2 564 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 MINPP1Q9UNW1 487 aa7.31□□□□□ -1.24
SMCHD1-208ENST00000583344 KRTAP9-7A8MTY7 169 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 FKTNO75072 461 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 CDCP2Q5VXM1 449 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 CIAPIN1Q6FI81 312 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 HS2ST1Q7LGA3 356 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 NLRC3Q7RTR2 1065 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 SIAH1Q8IUQ4 282 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 DAGLBQ8NCG7 672 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 ATG4CQ96DT6 458 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 KRTAP4-9Q9BYQ8 210 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 CNNM2Q9H8M5 875 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 EHMT1Q9H9B1 1298 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 ZMYM5Q9UJ78 669 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 TCFL5Q9UL49 500 aa7.3□□□□□ -1.24
SMCHD1-208ENST00000583344 TMEM82A0PJX8 343 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 NUAK1O60285 661 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 PRAMEF1O95521 474 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 DLG4P78352 724 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 APOBRQ0VD83 1088 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 BBS9Q3SYG4 887 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 MAP6Q96JE9 813 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 SGPP1Q9BX95 441 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 PRDM14Q9GZV8 571 aa7.29□□□□□ -1.24
SMCHD1-208ENST00000583344 SSU72P8A0A1W2PR75 194 aa7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 CLEC3AO75596 197 aa7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 SYPP08247 313 aa7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 MCM4P33991 863 aa7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 PCBP3P57721 371 aaKnown RBP7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 SNX17Q15036 470 aa7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 ZNF326Q5BKZ1 582 aaKnown RBP7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 NLRX1Q86UT6 975 aa7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 ZNF655Q8N720 491 aaPredicted RBP7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 IRF2BPLQ9H1B7 796 aa7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 ZNF552Q9H707 407 aaPredicted RBP7.28□□□□□ -1.24
SMCHD1-208ENST00000583344 MEIS1O00470 390 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 PEX10O60683 326 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 ADGRF1Q5T601 910 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 CEP128Q6ZU80 1094 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 AMIGO3Q86WK7 504 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 TMEM192Q8IY95 271 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 HHIPL1Q96JK4 782 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 GCM1Q9NP62 436 aa7.27□□□□□ -1.25
SMCHD1-208ENST00000583344 SIGLEC6O43699 453 aa7.26□□□□□ -1.25
SMCHD1-208ENST00000583344 SEMA7AO75326 666 aa7.26□□□□□ -1.25
SMCHD1-208ENST00000583344 NME1P15531 152 aaKnown RBP7.26□□□□□ -1.25
SMCHD1-208ENST00000583344 RAD51AP2Q09MP3 1159 aa7.26□□□□□ -1.25
SMCHD1-208ENST00000583344 SLC14A2Q15849 920 aa7.26□□□□□ -1.25
SMCHD1-208ENST00000583344 TMEM132EQ6IEE7 984 aa7.26□□□□□ -1.25
SMCHD1-208ENST00000583344 LINC00116Q8NCU8 138 aa7.26□□□□□ -1.25
SMCHD1-208ENST00000583344 TEX51A0A1B0GUA7 166 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 FAM86C2PA6NEL3 165 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 NRDCO43847 1150 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 SDHBP21912 280 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 KIR2DL1P43626 348 aaPredicted RBP7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 KIR2DL2P43627 348 aaPredicted RBP7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 ZNF165P49910 485 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 REXO1Q8N1G1 1221 aaKnown RBP7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 NKD1Q969G9 470 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 EAF1Q96JC9 268 aaPredicted RBP7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 SLC6A18Q96N87 628 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 PLCD4Q9BRC7 762 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 MKRN2Q9H000 416 aaKnown RBP7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 CHST7Q9NS84 486 aa7.25□□□□□ -1.25
SMCHD1-208ENST00000583344 GFOD1Q9NXC2 390 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms