RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TMC3Q7Z5M5 1100 aa10.16□□□□□ -0.78
SS18-214ENST00000580003 C7orf61Q8IZ16 206 aa10.16□□□□□ -0.78
SS18-214ENST00000580003 SYTL5Q8TDW5 730 aaPredicted RBP10.16□□□□□ -0.78
SS18-214ENST00000580003 ADAMTS6Q9UKP5 1117 aa10.16□□□□□ -0.78
SS18-214ENST00000580003 MRVI1Q9Y6F6 885 aa10.16□□□□□ -0.78
SS18-214ENST00000580003 LTBP3Q9NS15 1303 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 TP53P04637 393 aaPredicted RBP10.15□□□□□ -0.78
SS18-214ENST00000580003 CASP7P55210 303 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 EGR3Q06889 387 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 GNPTABQ3T906 1256 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 FAM169BQ8N8A8 192 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 DAGLBQ8NCG7 672 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 SYTL4Q96C24 671 aaPredicted RBP10.15□□□□□ -0.78
SS18-214ENST00000580003 CCDC120Q96HB5 630 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 FAM86C1Q9NVL1 165 aa10.15□□□□□ -0.78
SS18-214ENST00000580003 SIGLEC6O43699 453 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 FGRP09769 529 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 NAALADL2Q58DX5 795 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 CBLL1Q75N03 491 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 PPFIBP1Q86W92 1011 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 ZNF655Q8N720 491 aaPredicted RBP10.14□□□□□ -0.79
SS18-214ENST00000580003 ALPK1Q96QP1 1244 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 HDAC8Q9BY41 377 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 SLAMF8Q9P0V8 285 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 PCDHA11Q9Y5I1 949 aa10.14□□□□□ -0.79
SS18-214ENST00000580003 SSU72P8A0A1W2PR75 194 aa10.13□□□□□ -0.79
SS18-214ENST00000580003 PRAMEF1O95521 474 aa10.13□□□□□ -0.79
SS18-214ENST00000580003 SLC7A5Q01650 507 aa10.13□□□□□ -0.79
SS18-214ENST00000580003 TNNI3KQ59H18 835 aa10.13□□□□□ -0.79
SS18-214ENST00000580003 AXDND1Q5T1B0 1012 aaPredicted RBP10.13□□□□□ -0.79
SS18-214ENST00000580003 LRRN4CLQ8ND94 238 aa10.13□□□□□ -0.79
SS18-214ENST00000580003 CHST7Q9NS84 486 aa10.13□□□□□ -0.79
SS18-214ENST00000580003 GFOD1Q9NXC2 390 aa10.13□□□□□ -0.79
SS18-214ENST00000580003 ANKRD39Q53RE8 183 aa10.12□□□□□ -0.79
SS18-214ENST00000580003 DCAF15Q66K64 600 aa10.12□□□□□ -0.79
SS18-214ENST00000580003 MCF2L2Q86YR7 1114 aa10.12□□□□□ -0.79
SS18-214ENST00000580003 TCTN2Q96GX1 697 aa10.12□□□□□ -0.79
SS18-214ENST00000580003 GMLQ99445 158 aa10.12□□□□□ -0.79
SS18-214ENST00000580003 PRR13Q9NZ81 148 aa10.12□□□□□ -0.79
SS18-214ENST00000580003 BIN1O00499 593 aa10.11□□□□□ -0.79
SS18-214ENST00000580003 SMAD7O15105 426 aaKnown RBP10.11□□□□□ -0.79
SS18-214ENST00000580003 TCEAL1Q15170 157 aa10.11□□□□□ -0.79
SS18-214ENST00000580003 NOL9Q5SY16 702 aaKnown RBP10.11□□□□□ -0.79
SS18-214ENST00000580003 DSCC1Q9BVC3 393 aa10.11□□□□□ -0.79
SS18-214ENST00000580003 PRKAG3Q9UGI9 489 aa10.11□□□□□ -0.79
SS18-214ENST00000580003 PCDHB10Q9UN67 800 aa10.11□□□□□ -0.79
SS18-214ENST00000580003 MEIS1O00470 390 aa10.1□□□□□ -0.79
SS18-214ENST00000580003 PCBP3P57721 371 aaKnown RBP10.1□□□□□ -0.79
SS18-214ENST00000580003 RNF111Q6ZNA4 994 aa10.1□□□□□ -0.79
SS18-214ENST00000580003 C8orf37Q96NL8 207 aa10.1□□□□□ -0.79
SS18-214ENST00000580003 ACTR10Q9NZ32 417 aa10.1□□□□□ -0.79
SS18-214ENST00000580003 TAL1P17542 331 aaPredicted RBP10.09□□□□□ -0.79
SS18-214ENST00000580003 ETFBP38117 255 aa10.09□□□□□ -0.79
SS18-214ENST00000580003 VHLLQ6RSH7 139 aa10.09□□□□□ -0.79
SS18-214ENST00000580003 NPM2Q86SE8 214 aaKnown RBP10.09□□□□□ -0.79
SS18-214ENST00000580003 ATG4DQ86TL0 474 aaPredicted RBP10.09□□□□□ -0.79
SS18-214ENST00000580003 GP6Q9HCN6 339 aa10.09□□□□□ -0.79
SS18-214ENST00000580003 TMEM59LQ9UK28 342 aa10.09□□□□□ -0.79
SS18-214ENST00000580003 R3HCC1Q9Y3T6 440 aaKnown RBP10.09□□□□□ -0.79
SS18-214ENST00000580003 DNAJC25-GNG10A0A024R161 153 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 SHOXO15266 292 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 ITGA4P13612 1032 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 CD247P20963 164 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 HEATR6Q6AI08 1181 aaKnown RBP10.08□□□□□ -0.8
SS18-214ENST00000580003 MCTP1Q6DN14 999 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 USHBP1Q8N6Y0 703 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 DHX38Q92620 1227 aaKnown RBP10.08□□□□□ -0.8
SS18-214ENST00000580003 HAUS7Q99871 368 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 FOXP3Q9BZS1 431 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 GBP3Q9H0R5 595 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 ZNF408Q9H9D4 720 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 TCFL5Q9UL49 500 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 MINPP1Q9UNW1 487 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 CTNND2Q9UQB3 1225 aa10.08□□□□□ -0.8
SS18-214ENST00000580003 SYPP08247 313 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 GDNFP39905 211 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 TEKQ02763 1124 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 RALGPS1Q5JS13 557 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 KIAA1211LQ6NV74 962 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 LINC00116Q8NCU8 138 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 ADAMTS10Q9H324 1103 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 ZNF451Q9Y4E5 1061 aa10.07□□□□□ -0.8
SS18-214ENST00000580003 JUNBP17275 347 aaPredicted RBP10.06□□□□□ -0.8
SS18-214ENST00000580003 RPL10P27635 214 aaKnown RBP10.06□□□□□ -0.8
SS18-214ENST00000580003 AFMP43652 599 aa10.06□□□□□ -0.8
SS18-214ENST00000580003 HK2P52789 917 aa10.06□□□□□ -0.8
SS18-214ENST00000580003 ZNF445P59923 1031 aa10.06□□□□□ -0.8
SS18-214ENST00000580003 LARP1BQ659C4 914 aaKnown RBP10.06□□□□□ -0.8
SS18-214ENST00000580003 CWF19L1Q69YN2 538 aaKnown RBP10.06□□□□□ -0.8
SS18-214ENST00000580003 FLAD1Q8NFF5 587 aa10.06□□□□□ -0.8
SS18-214ENST00000580003 FHOD1Q9Y613 1164 aa10.06□□□□□ -0.8
SS18-214ENST00000580003 GSNP06396 782 aa10.05□□□□□ -0.8
SS18-214ENST00000580003 RAC2P15153 192 aa10.05□□□□□ -0.8
SS18-214ENST00000580003 NCAPHQ15003 741 aa10.05□□□□□ -0.8
SS18-214ENST00000580003 ADAT2Q7Z6V5 191 aaKnown RBP10.05□□□□□ -0.8
SS18-214ENST00000580003 KLHL6Q8WZ60 621 aa10.05□□□□□ -0.8
SS18-214ENST00000580003 BRF1Q92994 677 aa10.05□□□□□ -0.8
SS18-214ENST00000580003 TANGO6Q9C0B7 1094 aa10.05□□□□□ -0.8
SS18-214ENST00000580003 WHRNQ9P202 907 aa10.05□□□□□ -0.8
SS18-214ENST00000580003 A0A087WZG4 1122 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms