RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PPP4R3BQ5MIZ7 849 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 LDHDQ86WU2 507 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 SHISA4Q96DD7 197 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 CLMNQ96JQ2 1002 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 VAT1LQ9HCJ6 419 aa29.16■■■□□ 2.26
SHMT1-207ENST00000580002 PPP1R12BO60237 982 aaPredicted RBP29.15■■■□□ 2.26
SHMT1-207ENST00000580002 BRD1O95696 1058 aa29.15■■■□□ 2.26
SHMT1-207ENST00000580002 CCDC96Q2M329 555 aa29.15■■■□□ 2.26
SHMT1-207ENST00000580002 SNCAIPQ9Y6H5 919 aa29.15■■■□□ 2.26
SHMT1-207ENST00000580002 TTLL12Q14166 644 aaPredicted RBP29.14■■■□□ 2.26
SHMT1-207ENST00000580002 GMCL1P1Q8NEA9 526 aa29.14■■■□□ 2.26
SHMT1-207ENST00000580002 ALG1Q9BT22 464 aa29.14■■■□□ 2.26
SHMT1-207ENST00000580002 ISY1Q9ULR0 285 aaKnown RBP29.14■■■□□ 2.26
SHMT1-207ENST00000580002 VPS37CA5D8V6 355 aaPredicted RBP29.13■■■□□ 2.25
SHMT1-207ENST00000580002 SLC1A4P43007 532 aa29.13■■■□□ 2.25
SHMT1-207ENST00000580002 PICK1Q9NRD5 415 aa29.13■■■□□ 2.25
SHMT1-207ENST00000580002 ZHX2Q9Y6X8 837 aa29.13■■■□□ 2.25
SHMT1-207ENST00000580002 PRPF3O43395 683 aaKnown RBP29.13■■■□□ 2.25
SHMT1-207ENST00000580002 SPP2Q13103 211 aa29.13■■■□□ 2.25
SHMT1-207ENST00000580002 NOL9Q5SY16 702 aaKnown RBP29.12■■■□□ 2.25
SHMT1-207ENST00000580002 RNF26Q9BY78 433 aaPredicted RBP29.12■■■□□ 2.25
SHMT1-207ENST00000580002 STK36Q9NRP7 1315 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 NF2P35240 595 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 NUCB2P80303 420 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 ASPRV1Q53RT3 343 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 TRIM22Q8IYM9 498 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 TNPO1Q92973 898 aaKnown RBP29.11■■■□□ 2.25
SHMT1-207ENST00000580002 VCPKMTQ9H867 229 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 DOCK1Q14185 1865 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 GNAQP50148 359 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 FAM83BQ5T0W9 1011 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 FERMT3Q86UX7 667 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 DCAF4Q8WV16 495 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 FEZ1Q99689 392 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 GINM1Q9NU53 330 aa29.11■■■□□ 2.25
SHMT1-207ENST00000580002 TRIM75PA6NK02 468 aa29.1■■■□□ 2.25
SHMT1-207ENST00000580002 IREB2P48200 963 aaKnown RBP29.1■■■□□ 2.25
SHMT1-207ENST00000580002 MTMR2Q13614 643 aa29.1■■■□□ 2.25
SHMT1-207ENST00000580002 FOXD4L6Q3SYB3 417 aaPredicted RBP29.1■■■□□ 2.25
SHMT1-207ENST00000580002 FOXD4L3Q6VB84 417 aaPredicted RBP29.1■■■□□ 2.25
SHMT1-207ENST00000580002 GMCL1Q96IK5 515 aa29.1■■■□□ 2.25
SHMT1-207ENST00000580002 ELP3Q9H9T3 547 aa29.1■■■□□ 2.25
SHMT1-207ENST00000580002 DEXIO95424 95 aa29.09■■■□□ 2.25
SHMT1-207ENST00000580002 ZSCAN22P10073 491 aaPredicted RBP29.09■■■□□ 2.25
SHMT1-207ENST00000580002 C8orf76Q96K31 380 aa29.09■■■□□ 2.25
SHMT1-207ENST00000580002 PIGSQ96S52 555 aa29.09■■■□□ 2.25
SHMT1-207ENST00000580002 EMILIN3Q9NT22 766 aa29.09■■■□□ 2.25
SHMT1-207ENST00000580002 BMP3P12645 472 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 SNAP25P60880 206 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 HOMER1Q86YM7 354 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 ADGRF4Q8IZF3 695 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 RIOX1Q9H6W3 641 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 GOPCQ9HD26 462 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 USP17L10C9JJH3 530 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 TMEM232C9JQI7 657 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 PDCP20941 246 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 ZNF280CQ8ND82 737 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 GPKOWQ92917 476 aaPredicted RBP eCLIP29.08■■■□□ 2.25
SHMT1-207ENST00000580002 WDR18Q9BV38 432 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 SPZ1Q9BXG8 430 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 JMJD4Q9H9V9 463 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 VPS54Q9P1Q0 977 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 KCNJ14Q9UNX9 436 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 OTOFQ9HC10 1997 aa29.08■■■□□ 2.25
SHMT1-207ENST00000580002 H3BQV1 296 aa29.07■■■□□ 2.24
SHMT1-207ENST00000580002 ITGBL1O95965 494 aaPredicted RBP29.07■■■□□ 2.24
SHMT1-207ENST00000580002 AKAP17AQ02040 695 aaKnown RBP29.07■■■□□ 2.24
SHMT1-207ENST00000580002 MAP3K11Q16584 847 aa29.07■■■□□ 2.24
SHMT1-207ENST00000580002 IFFO2Q5TF58 517 aa29.07■■■□□ 2.24
SHMT1-207ENST00000580002 LZTS2Q9BRK4 669 aa29.07■■■□□ 2.24
SHMT1-207ENST00000580002 KIAA1683Q9H0B3 1180 aa29.07■■■□□ 2.24
SHMT1-207ENST00000580002 AFG3L2Q9Y4W6 797 aa29.07■■■□□ 2.24
SHMT1-207ENST00000580002 PAPPA2Q9BXP8 1791 aa29.07■■■□□ 2.24
SHMT1-207ENST00000580002 WDR33Q9C0J8 1336 aaKnown RBP29.07■■■□□ 2.24
SHMT1-207ENST00000580002 GPATCH4Q5T3I0 446 aaKnown RBP29.06■■■□□ 2.24
SHMT1-207ENST00000580002 KRT40Q6A162 431 aa29.06■■■□□ 2.24
SHMT1-207ENST00000580002 FBXO18Q8NFZ0 1043 aa29.06■■■□□ 2.24
SHMT1-207ENST00000580002 SYNPO2Q9UMS6 1093 aa29.06■■■□□ 2.24
SHMT1-207ENST00000580002 CSADQ9Y600 493 aa29.06■■■□□ 2.24
SHMT1-207ENST00000580002 ADAMTS3O15072 1205 aa29.06■■■□□ 2.24
SHMT1-207ENST00000580002 FAM173BQ6P4H8 233 aa29.06■■■□□ 2.24
SHMT1-207ENST00000580002 BACE1P56817 501 aa29.05■■■□□ 2.24
SHMT1-207ENST00000580002 PFKFB3Q16875 520 aaPredicted RBP29.05■■■□□ 2.24
SHMT1-207ENST00000580002 CHADLQ6NUI6 762 aa29.05■■■□□ 2.24
SHMT1-207ENST00000580002 TYW1BQ6NUM6 668 aa29.05■■■□□ 2.24
SHMT1-207ENST00000580002 ARMC9Q7Z3E5 817 aa29.05■■■□□ 2.24
SHMT1-207ENST00000580002 ANKRD13AQ8IZ07 590 aa29.05■■■□□ 2.24
SHMT1-207ENST00000580002 FBXO28Q9NVF7 368 aa29.05■■■□□ 2.24
SHMT1-207ENST00000580002 PHIPQ8WWQ0 1821 aa29.05■■■□□ 2.24
SHMT1-207ENST00000580002 CELF2O95319 508 aaKnown RBP29.04■■■□□ 2.24
SHMT1-207ENST00000580002 F13A1P00488 732 aa29.04■■■□□ 2.24
SHMT1-207ENST00000580002 SCG2P13521 617 aa29.04■■■□□ 2.24
SHMT1-207ENST00000580002 HMGCS2P54868 508 aa29.04■■■□□ 2.24
SHMT1-207ENST00000580002 CST9Q5W186 159 aa29.04■■■□□ 2.24
SHMT1-207ENST00000580002 SH2D4AQ9H788 454 aa29.04■■■□□ 2.24
SHMT1-207ENST00000580002 GPBP1L1Q9HC44 474 aaPredicted RBP29.04■■■□□ 2.24
SHMT1-207ENST00000580002 KIF3AQ9Y496 699 aa29.04■■■□□ 2.24
SHMT1-207ENST00000580002 LDLRAD1Q5T700 205 aa29.03■■■□□ 2.24
SHMT1-207ENST00000580002 SAMD1Q6SPF0 538 aaPredicted RBP29.03■■■□□ 2.24
SHMT1-207ENST00000580002 AS3MTQ9HBK9 375 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms