RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 HOXD10P28358 340 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 PRMT2P55345 433 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 CCNA1P78396 465 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 LACTBP83111 547 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-214ENST00000575431 PKN2Q16513 984 aaKnown RBP11.22□□□□□ -0.61
CCDC40-214ENST00000575431 KIAA1755Q5JYT7 1200 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 FAM83BQ5T0W9 1011 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 IFIT1BQ5T764 474 aaKnown RBP11.22□□□□□ -0.61
CCDC40-214ENST00000575431 STOX1Q6ZVD7 989 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 FAM160B2Q86V87 743 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 MB21D2Q8IYB1 491 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-214ENST00000575431 ENAHQ8N8S7 591 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-214ENST00000575431 PRPF38AQ8NAV1 312 aaKnown RBP11.22□□□□□ -0.61
CCDC40-214ENST00000575431 GPRC5AQ8NFJ5 357 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 CHURC1Q8WUH1 139 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 ZKSCAN3Q9BRR0 538 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 USP26Q9BXU7 913 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 FEM1BQ9UK73 627 aa11.22□□□□□ -0.61
CCDC40-214ENST00000575431 SPDYE16A6NNV3 312 aaPredicted RBP11.21□□□□□ -0.61
CCDC40-214ENST00000575431 STAT2P52630 851 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 FCGRTP55899 365 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 WTAPQ15007 396 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 SEC23AQ15436 765 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 GPATCH4Q5T3I0 446 aaKnown RBP11.21□□□□□ -0.61
CCDC40-214ENST00000575431 CYB5R4Q7L1T6 521 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 DHX32Q7L7V1 743 aaKnown RBP11.21□□□□□ -0.61
CCDC40-214ENST00000575431 ANKRD13CQ8N6S4 541 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 PNMA1Q8ND90 353 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 SLF1Q9BQI6 1058 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 RBPJLQ9UBG7 517 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 PNMA2Q9UL42 364 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 PPP1R9AQ9ULJ8 1098 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 ADAMTS5Q9UNA0 930 aa11.21□□□□□ -0.61
CCDC40-214ENST00000575431 PRC1O43663 620 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 SNHG28P0DPA3 235 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 PDHBP11177 359 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 COPB2P35606 906 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 LIFRP42702 1097 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 ERVK-9P63128 1117 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 ERVK-24P63145 666 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 TMEM67Q5HYA8 995 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 CTU1Q7Z7A3 348 aaKnown RBP11.2□□□□□ -0.62
CCDC40-214ENST00000575431 CCAR1Q8IX12 1150 aaKnown RBP11.2□□□□□ -0.62
CCDC40-214ENST00000575431 EFCC1Q9HA90 598 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 CTDP1Q9Y5B0 961 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-214ENST00000575431 TAF6LQ9Y6J9 622 aa11.2□□□□□ -0.62
CCDC40-214ENST00000575431 PARP14Q460N5 1801 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 TMEM232C9JQI7 657 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 VWA5AO00534 786 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 ZBED4O75132 1171 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 FMNL1O95466 1100 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-214ENST00000575431 MAPK4P31152 587 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 PSMC4P43686 418 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 OAZ1P54368 228 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 ANAPC15P60006 121 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 CCDC96Q2M329 555 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 ASPRV1Q53RT3 343 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 BLOC1S2Q6QNY1 142 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 BTNL9Q6UXG8 535 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 RASEFQ8IZ41 740 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 SHCBP1Q8NEM2 672 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 NKX2-3Q8TAU0 364 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 CD99L2Q8TCZ2 262 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 IGDCC4Q8TDY8 1250 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 COA7Q96BR5 231 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 MAP3K14Q99558 947 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 NUP88Q99567 741 aaPredicted RBP11.19□□□□□ -0.62
CCDC40-214ENST00000575431 PAGR1Q9BTK6 254 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 ISY1Q9ULR0 285 aaKnown RBP11.19□□□□□ -0.62
CCDC40-214ENST00000575431 SNX14Q9Y5W7 946 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 CASP8AP2Q9UKL3 1982 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 RLFQ13129 1914 aa11.19□□□□□ -0.62
CCDC40-214ENST00000575431 A0A0G2JMZ2 1700 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 TNPO2O14787 897 aaKnown RBP11.18□□□□□ -0.62
CCDC40-214ENST00000575431 ATP2A1O14983 1001 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 SLC25A27O95847 323 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 PARP1P09874 1014 aaKnown RBP11.18□□□□□ -0.62
CCDC40-214ENST00000575431 CALM1P0DP23 149 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 CALM2P0DP24 149 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 CALM3P0DP25 149 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 ANTXR2P58335 489 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 EXOSC10Q01780 885 aaKnown RBP11.18□□□□□ -0.62
CCDC40-214ENST00000575431 ZNF543Q08ER8 600 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 IKQ13123 557 aaPredicted RBP11.18□□□□□ -0.62
CCDC40-214ENST00000575431 SYNE3Q6ZMZ3 975 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 CATIPQ7Z7H3 387 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 SGMS1Q86VZ5 419 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 KIFC2Q96AC6 838 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 ATG4CQ96DT6 458 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 TM6SF1Q9BZW5 370 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 MROH8Q9H579 483 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 TXNRD2Q9NNW7 524 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 FBXO28Q9NVF7 368 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 TRIM17Q9Y577 477 aa11.18□□□□□ -0.62
CCDC40-214ENST00000575431 CCDC69A6NI79 296 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 SH2B2O14492 632 aaPredicted RBP11.17□□□□□ -0.62
CCDC40-214ENST00000575431 STRNO43815 780 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 DDAH1O94760 285 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 KIF5BP33176 963 aa11.17□□□□□ -0.62
CCDC40-214ENST00000575431 STAT3P40763 770 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms