RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CCDC122Q5T0U0 273 aa10.77□□□□□ -0.69
CCDC40-212ENST00000574799 KCTD16Q68DU8 428 aa10.77□□□□□ -0.69
CCDC40-212ENST00000574799 MICU3Q86XE3 530 aa10.77□□□□□ -0.69
CCDC40-212ENST00000574799 GPHNQ9NQX3 736 aaPredicted RBP10.77□□□□□ -0.69
CCDC40-212ENST00000574799 GNL3LQ9NVN8 582 aaKnown RBP10.77□□□□□ -0.69
CCDC40-212ENST00000574799 RTL9Q8NET4 1388 aa10.77□□□□□ -0.69
CCDC40-212ENST00000574799 SCP2P22307 547 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 ARHGAP25P42331 645 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 IMMTQ16891 758 aaKnown RBP10.76□□□□□ -0.69
CCDC40-212ENST00000574799 DSCC1Q9BVC3 393 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 CDCA7Q9BWT1 371 aaPredicted RBP10.76□□□□□ -0.69
CCDC40-212ENST00000574799 POLD4Q9HCU8 107 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 PDE8BO95263 885 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 DNA2P51530 1060 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 IRAK1P51617 712 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 SATB1Q01826 763 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 E2F5Q15329 346 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 FAM98CQ17RN3 349 aaKnown RBP10.76□□□□□ -0.69
CCDC40-212ENST00000574799 CCDC57Q2TAC2 916 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 EHD4Q9H223 541 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 VPS16Q9H269 839 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 ZNF646O15015 1829 aaPredicted RBP10.76□□□□□ -0.69
CCDC40-212ENST00000574799 E7EWF7 191 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 RNF113AO15541 343 aaKnown RBP10.76□□□□□ -0.69
CCDC40-212ENST00000574799 PDE8AO60658 829 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 PHKA1P46020 1223 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 PDCLQ13371 301 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 POSTNQ15063 836 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 VPS72Q15906 364 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 RAD9BQ6WBX8 426 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 MLKLQ8NB16 471 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 MSANTD4Q8NCY6 345 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 CD248Q9HCU0 757 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 ZNHIT6Q9NWK9 470 aaKnown RBP10.76□□□□□ -0.69
CCDC40-212ENST00000574799 SAR1BQ9Y6B6 198 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 MAST2Q6P0Q8 1798 aa10.76□□□□□ -0.69
CCDC40-212ENST00000574799 IRS2Q9Y4H2 1338 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 GOLGA6L10A6NI86 522 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 PRC1O43663 620 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 MYO1BO43795 1136 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 IFIT1P09914 478 aaKnown RBP10.75□□□□□ -0.69
CCDC40-212ENST00000574799 ANTXR2P58335 489 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 IFIT5Q13325 482 aaKnown RBP10.75□□□□□ -0.69
CCDC40-212ENST00000574799 ODF2Q5BJF6 829 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 CCDC121Q6ZUS5 278 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 NAA15Q9BXJ9 866 aaKnown RBP10.75□□□□□ -0.69
CCDC40-212ENST00000574799 A0A0U1RQJ8 604 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 CHUKO15111 745 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 TEX33O43247 280 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 SRGAP2O75044 1071 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 RPSAP08865 295 aaKnown RBP10.75□□□□□ -0.69
CCDC40-212ENST00000574799 KRT9P35527 623 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 SLC39A14Q15043 492 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 VPS37DQ86XT2 251 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 TMTC1Q8IUR5 882 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 KAT2BQ92831 832 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.75□□□□□ -0.69
CCDC40-212ENST00000574799 RAB21Q9UL25 225 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 FOXN1O15353 648 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 CDKL5O76039 1030 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 USP5P45974 858 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 MRPS25P82663 173 aaKnown RBP10.75□□□□□ -0.69
CCDC40-212ENST00000574799 GRAMD1CQ8IYS0 662 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 ZNF384Q8TF68 577 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 TRMT112Q9UI30 125 aaKnown RBP10.75□□□□□ -0.69
CCDC40-212ENST00000574799 WWC3Q9ULE0 1092 aa10.75□□□□□ -0.69
CCDC40-212ENST00000574799 ELF1P32519 619 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 IFT88Q13099 833 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 FAM182BQ5T319 152 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 ILDR1Q86SU0 546 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-212ENST00000574799 FBXL16Q8N461 479 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 COG1Q8WTW3 980 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 CTAGE1Q96RT6 745 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 SELENOOQ9BVL4 669 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 COBLO75128 1261 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 PEX19P40855 299 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 PDE4BQ07343 736 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 KRI1Q8N9T8 703 aaKnown RBP10.74□□□□□ -0.69
CCDC40-212ENST00000574799 HELBQ8NG08 1087 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-212ENST00000574799 AIDAQ96BJ3 306 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 ZNF274Q96GC6 653 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-212ENST00000574799 PSMB7Q99436 277 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 HDAC6Q9UBN7 1215 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 SERTAD1Q9UHV2 236 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 HPCAL4Q9UM19 191 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 ANKRD31Q8N7Z5 1873 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 MACROD2A1Z1Q3 448 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 METAP2P50579 478 aaKnown RBP eCLIP10.74□□□□□ -0.69
CCDC40-212ENST00000574799 BIRC2Q13490 618 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 DDX60LQ5H9U9 1706 aaKnown RBP10.74□□□□□ -0.69
CCDC40-212ENST00000574799 MAATS1Q7Z4T9 603 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 FMNL3Q8IVF7 1028 aa10.74□□□□□ -0.69
CCDC40-212ENST00000574799 BCCIPQ9P287 314 aaKnown RBP eCLIP10.74□□□□□ -0.69
CCDC40-212ENST00000574799 IDEP14735 1019 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 HPDP32754 393 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-212ENST00000574799 GCKP35557 465 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 IARSP41252 1262 aaKnown RBP10.73□□□□□ -0.69
CCDC40-212ENST00000574799 CYP26C1Q6V0L0 522 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 LDHAL6AQ6ZMR3 332 aa10.73□□□□□ -0.69
CCDC40-212ENST00000574799 PHKBQ93100 1093 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms