RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 USP17L11C9JVI0 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L18D6R9N7 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L22D6RA61 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L17D6RBQ6 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L19D6RCP7 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L20D6RJB6 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 M0R2C6 588 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 SLC3A2P08195 630 aaKnown RBP9.67□□□□□ -0.86
VPS53-214ENST00000572607 HOXA7P31268 230 aaPredicted RBP9.67□□□□□ -0.86
VPS53-214ENST00000572607 CDK8P49336 464 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 ICA1Q05084 483 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L24Q0WX57 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 SEPT2Q15019 361 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 SBK1Q52WX2 424 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 CTR9Q6PD62 1173 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 C16orf86Q6ZW13 317 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 CCAR1Q8IX12 1150 aaKnown RBP9.67□□□□□ -0.86
VPS53-214ENST00000572607 SLC44A5Q8NCS7 719 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 WNT2BQ93097 391 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 COA7Q96BR5 231 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 TRIM47Q96LD4 638 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 C12orf42Q96LP6 360 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 KIAA1683Q9H0B3 1180 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 NAPBQ9H115 298 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 PRO3102Q9H379 93 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 CWC22Q9HCG8 908 aaKnown RBP9.67□□□□□ -0.86
VPS53-214ENST00000572607 SRRDQ9UH36 339 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 CDK5RAP2Q96SN8 1893 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 DDX60LQ5H9U9 1706 aaKnown RBP9.66□□□□□ -0.86
VPS53-214ENST00000572607 GSG1L2A8MUP6 293 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 PATL2C9JE40 543 aaKnown RBP9.66□□□□□ -0.86
VPS53-214ENST00000572607 H0YGN5 161 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 IGHDP01880 384 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 AKR1B1P15121 316 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 CTGFP29279 349 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 HERVK_113P62684 666 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 IRX6P78412 446 aaPredicted RBP9.66□□□□□ -0.86
VPS53-214ENST00000572607 ATP2B2Q01814 1243 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 NUCB1Q02818 461 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 ZMYM1Q5SVZ6 1142 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 TICAM2Q86XR7 235 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 IFNL3Q8IZI9 196 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 ACER1Q8TDN7 264 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 RILPL2Q969X0 211 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 NBPF3Q9H094 633 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 PCDHGA10Q9Y5H3 936 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 ATAD5Q96QE3 1844 aa9.66□□□□□ -0.86
VPS53-214ENST00000572607 LOC285556D6RIA3 1793 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 VCAM1P19320 739 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 UBXN2AP68543 259 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 PRKCZQ05513 592 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 PDE4BQ07343 736 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 UBE2Q1Q7Z7E8 422 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 ZNF444Q8N0Y2 327 aaPredicted RBP9.65□□□□□ -0.86
VPS53-214ENST00000572607 STK11IPQ8N1F8 1099 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 GPRC5AQ8NFJ5 357 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 SEC62Q99442 399 aaKnown RBP9.65□□□□□ -0.86
VPS53-214ENST00000572607 P2RX7Q99572 595 aaKnown RBP9.65□□□□□ -0.86
VPS53-214ENST00000572607 PAGR1Q9BTK6 254 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 RPAP3Q9H6T3 665 aaPredicted RBP9.65□□□□□ -0.86
VPS53-214ENST00000572607 KANSL2Q9H9L4 492 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 HELLSQ9NRZ9 838 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 MORF4L1Q9UBU8 362 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 BIN2Q9UBW5 565 aaPredicted RBP9.65□□□□□ -0.86
VPS53-214ENST00000572607 PHIPQ8WWQ0 1821 aa9.65□□□□□ -0.86
VPS53-214ENST00000572607 ROBO3Q96MS0 1386 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 PPP1R3GB7ZBB8 358 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 GRK4P32298 578 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 GUCY1A2P33402 732 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 MFAP1P55081 439 aaKnown RBP9.64□□□□□ -0.87
VPS53-214ENST00000572607 CCNA1P78396 465 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 CATSPERGQ6ZRH7 1159 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 SH3TC2Q8TF17 1288 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 LPAR1Q92633 364 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 TANGO6Q9C0B7 1094 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 EPB41L4AQ9HCS5 686 aaPredicted RBP9.64□□□□□ -0.87
VPS53-214ENST00000572607 GOPCQ9HD26 462 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 TMX2Q9Y320 296 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 PTPRFP10586 1907 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 MYH7P12883 1935 aa9.64□□□□□ -0.87
VPS53-214ENST00000572607 DOCK3Q8IZD9 2030 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 HIP1O00291 1037 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 RAD21O60216 631 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 ADCY3O60266 1144 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 RGS20O76081 388 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 MYCP01106 439 aaPredicted RBP9.63□□□□□ -0.87
VPS53-214ENST00000572607 EEF2P13639 858 aaKnown RBP9.63□□□□□ -0.87
VPS53-214ENST00000572607 MAPK4P31152 587 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 FLT3LGP49771 235 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 ERVK-9P63128 1117 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 ERVK-24P63145 666 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 PPARAQ07869 468 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 IRF5Q13568 498 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 MTFR1Q15390 333 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 MCMDC2Q4G0Z9 681 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 CCDC129Q6ZRS4 1044 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 PLEKHM2Q8IWE5 1019 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 SOCS4Q8WXH5 440 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 OSBPL3Q9H4L5 887 aa9.63□□□□□ -0.87
VPS53-214ENST00000572607 VCPKMTQ9H867 229 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms