RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 EPN1Q9Y6I3 576 aaPredicted RBP12.12□□□□□ -0.47
CCDC40-207ENST00000572253 MYO5AQ9Y4I1 1855 aaKnown RBP12.12□□□□□ -0.47
CCDC40-207ENST00000572253 WWC2Q6AWC2 1192 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 TMTC3Q6ZXV5 915 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 BRINP3Q76B58 766 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 OR8K1Q8NGG5 319 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 HAUS4Q9H6D7 363 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 ZNHIT6Q9NWK9 470 aaKnown RBP12.12□□□□□ -0.47
CCDC40-207ENST00000572253 LUC7L2Q9Y383 392 aaKnown RBP12.12□□□□□ -0.47
CCDC40-207ENST00000572253 ZBTB22O15209 634 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 RPN1P04843 607 aaKnown RBP12.12□□□□□ -0.47
CCDC40-207ENST00000572253 MCM7P33993 719 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 STAT6P42226 847 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 ERVK-24P63145 666 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 PIK3AP1Q6ZUJ8 805 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 CCDC47Q96A33 483 aaKnown RBP12.12□□□□□ -0.47
CCDC40-207ENST00000572253 MED4Q9NPJ6 270 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 GUCA1BQ9UMX6 200 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 MYH3P11055 1940 aa12.12□□□□□ -0.47
CCDC40-207ENST00000572253 CALML3P27482 149 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 CKAP4Q07065 602 aaKnown RBP12.11□□□□□ -0.47
CCDC40-207ENST00000572253 CASP8Q14790 479 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 EARS2Q5JPH6 523 aaKnown RBP12.11□□□□□ -0.47
CCDC40-207ENST00000572253 TMEM51Q9NW97 253 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 XDHP47989 1333 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 A0A0U1RQJ8 604 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 KRT83P78385 493 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 PARP10Q53GL7 1025 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 KIAA1328Q86T90 577 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 ATRIPQ8WXE1 791 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 SOS2Q07890 1332 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-207ENST00000572253 NDUFA10O95299 355 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 LONP1P36776 959 aaKnown RBP12.11□□□□□ -0.47
CCDC40-207ENST00000572253 TNNT3P45378 269 aaPredicted RBP12.11□□□□□ -0.47
CCDC40-207ENST00000572253 VSNL1P62760 191 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 NOM1Q5C9Z4 860 aaKnown RBP12.11□□□□□ -0.47
CCDC40-207ENST00000572253 CCDC70Q6NSX1 233 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 COBLO75128 1261 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 SCG2P13521 617 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 SLC20A2Q08357 652 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 FUT2Q10981 343 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 RPGRIP1Q96KN7 1286 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 BRIP1Q9BX63 1249 aa12.11□□□□□ -0.47
CCDC40-207ENST00000572253 PSMA7O14818 248 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 ARL6IP4Q66PJ3 421 aaKnown RBP12.1□□□□□ -0.47
CCDC40-207ENST00000572253 FAN1Q9Y2M0 1017 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 PARP1P09874 1014 aaKnown RBP12.1□□□□□ -0.47
CCDC40-207ENST00000572253 KIF5BP33176 963 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 CYLC1P35663 651 aaPredicted RBP12.1□□□□□ -0.47
CCDC40-207ENST00000572253 ARHGAP25P42331 645 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 CHRNDQ07001 517 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 E2F4Q16254 413 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 SUSD4Q5VX71 490 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 IQCEQ6IPM2 695 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 PDXDC2PQ6P474 469 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 CAGE1Q8TC20 777 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 RASSF4Q9H2L5 321 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 KRT86O43790 486 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 EEF1GP26641 437 aaKnown RBP12.1□□□□□ -0.47
CCDC40-207ENST00000572253 CDC25AP30304 524 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 EIF5P55010 431 aaKnown RBP12.1□□□□□ -0.47
CCDC40-207ENST00000572253 CAVIN4Q5BKX8 364 aa12.1□□□□□ -0.47
CCDC40-207ENST00000572253 NOC3LQ8WTT2 800 aaKnown RBP12.1□□□□□ -0.47
CCDC40-207ENST00000572253 TROAPQ12815 778 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 CCDC122Q5T0U0 273 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 TNFRSF25Q93038 417 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 TRIM47Q96LD4 638 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 SAR1BQ9Y6B6 198 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 MYH6P13533 1939 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 KAT6BQ8WYB5 2073 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 WDR93Q6P2C0 686 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 MAPK8IP1Q9UQF2 711 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 CNTNAP5Q8WYK1 1306 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 A0A1W2PQC6 194 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 LGALS16A8MUM7 142 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 NCAPH2Q6IBW4 605 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 MB21D1Q8N884 522 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 SHISA4Q96DD7 197 aa12.09□□□□□ -0.47
CCDC40-207ENST00000572253 PCMTD1Q96MG8 357 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-207ENST00000572253 MKRN1Q9UHC7 482 aaKnown RBP12.09□□□□□ -0.47
CCDC40-207ENST00000572253 FEZ2Q9UHY8 353 aaPredicted RBP12.09□□□□□ -0.47
CCDC40-207ENST00000572253 PSMD14O00487 310 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 UBA7P41226 1012 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 PRCPP42785 496 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 DNM2P50570 870 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 NOA1Q8NC60 698 aaKnown RBP12.08□□□□□ -0.48
CCDC40-207ENST00000572253 NUP58Q9BVL2 599 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 THAP9Q9H5L6 903 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 VIPAS39Q9H9C1 493 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 GDAQ9Y2T3 454 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 LRP5O75197 1615 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 CCDC194A0A1B0GVG4 234 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 AMPD2Q01433 879 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 DTHD1Q6ZMT9 781 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 FAM114A1Q8IWE2 563 aa12.08□□□□□ -0.48
CCDC40-207ENST00000572253 ARAP2Q8WZ64 1704 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 CYP2D7A0A087X1C5 515 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 TTC26A0AVF1 554 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 WNT7AO00755 349 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 PHACTR2O75167 634 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms