RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TRAF1Q13077 416 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 RESTQ13127 1097 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 PICALMQ13492 652 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 COL9A3Q14050 684 aaPredicted RBP9.21□□□□□ -0.94
VPS39-213ENST00000570062 E2F4Q16254 413 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 FAM47AQ5JRC9 791 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 L1TD1Q5T7N2 865 aaKnown RBP9.21□□□□□ -0.94
VPS39-213ENST00000570062 CDC37L1Q7L3B6 337 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 TEX2Q8IWB9 1127 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 ZSCAN29Q8IWY8 852 aaPredicted RBP9.21□□□□□ -0.94
VPS39-213ENST00000570062 ZNF713Q8N859 430 aaPredicted RBP9.21□□□□□ -0.94
VPS39-213ENST00000570062 JMYQ8N9B5 988 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 FAM151AQ8WW52 585 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 SPATA32Q96LK8 384 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 SLC26A6Q9BXS9 759 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 FOXP1Q9H334 677 aaPredicted RBP9.21□□□□□ -0.94
VPS39-213ENST00000570062 KANSL2Q9H9L4 492 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 SH3GLB2Q9NR46 395 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 CEP131Q9UPN4 1083 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 BCS1LQ9Y276 419 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 LAMA4Q16363 1823 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 ATRNL1Q5VV63 1379 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 GRXCR2A6NFK2 248 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 SMAPO00193 183 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 PSMD14O00487 310 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 YEATS4O95619 227 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 BMP15O95972 392 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 CDC27P30260 824 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 GRM4Q14833 912 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 ASPRV1Q53RT3 343 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 GPATCH4Q5T3I0 446 aaKnown RBP9.2□□□□□ -0.94
VPS39-213ENST00000570062 TATDN1Q6P1N9 297 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 Q6ZNB5 142 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 TMEM179Q6ZVK1 233 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 TMTC3Q6ZXV5 915 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 USP48Q86UV5 1035 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 STK11IPQ8N1F8 1099 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 KCNG4Q8TDN1 519 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 CABP5Q9NP86 173 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 FAM217BQ9NTX9 383 aaPredicted RBP9.2□□□□□ -0.94
VPS39-213ENST00000570062 MTMR4Q9NYA4 1195 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.2□□□□□ -0.94
VPS39-213ENST00000570062 RCOR1Q9UKL0 485 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 STX8Q9UNK0 236 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 TACC3Q9Y6A5 838 aa9.2□□□□□ -0.94
VPS39-213ENST00000570062 MYH13Q9UKX3 1938 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 FZD9O00144 591 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 RAD17O75943 681 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 PARP1P09874 1014 aaKnown RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 U2AF2P26368 475 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS39-213ENST00000570062 ZNF280AP59817 542 aaPredicted RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 DNM1Q05193 864 aaKnown RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 CXCL9Q07325 125 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 SF3A1Q15459 793 aaKnown RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 CERKLQ49MI3 558 aaPredicted RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 RILPL1Q5EBL4 403 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 COL13A1Q5TAT6 717 aaPredicted RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 FOXD4L5Q5VV16 416 aaPredicted RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 SAMD7Q7Z3H4 446 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 NBPF11Q86T75 865 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 SLC51AQ86UW1 340 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 CCDC148Q8NFR7 591 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 FOXD4L4Q8WXT5 416 aaPredicted RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 MKL1Q969V6 931 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 DYNLL2Q96FJ2 89 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 TMEM47Q9BQJ4 181 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 GLT8D2Q9H1C3 349 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 KCNQ5Q9NR82 932 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 IL17RBQ9NRM6 502 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 POLR3EQ9NVU0 708 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 RTEL1Q9NZ71 1219 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 NYAP2Q9P242 653 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 MORC2Q9Y6X9 1032 aaPredicted RBP9.19□□□□□ -0.94
VPS39-213ENST00000570062 DLEC1Q9Y238 1755 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 SLX4Q8IY92 1834 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 KIF13BQ9NQT8 1826 aa9.19□□□□□ -0.94
VPS39-213ENST00000570062 PALM3A6NDB9 673 aaPredicted RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 H7C1D1 291 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 MMP1P03956 469 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 HSPA6P17066 643 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 TRAPPC10P48553 1259 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 KIF23Q02241 960 aaPredicted RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 PFKFB3Q16875 520 aaPredicted RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 RBM26Q5T8P6 1007 aaKnown RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 KRT40Q6A162 431 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 MCTP2Q6DN12 878 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 FERMT3Q86UX7 667 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 CCDC144CPQ8IYA2 1237 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 PRMT6Q96LA8 375 aaPredicted RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 MXD3Q9BW11 206 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 SPZ1Q9BXG8 430 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 SH2D4AQ9H788 454 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 TDRD3Q9H7E2 651 aaKnown RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 DDX4Q9NQI0 724 aaKnown RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 WDR70Q9NW82 654 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 ZNF70Q9UC06 446 aaPredicted RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 FAM198AQ9UFP1 575 aa9.18□□□□□ -0.94
VPS39-213ENST00000570062 NOL7Q9UMY1 257 aaKnown RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 V9GY48 417 aaPredicted RBP9.18□□□□□ -0.94
VPS39-213ENST00000570062 IGKV6D-41A0A0C4DH26 115 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms