RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 YEATS4O95619 227 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 LMOD1P29536 600 aaPredicted RBP21.89■■□□□ 1.09
CLN3-233ENST00000568452 NLRP5P59047 1200 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 RRP1BQ14684 758 aaKnown RBP21.89■■□□□ 1.09
CLN3-233ENST00000568452 C9orf131Q5VYM1 1079 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 GMCL1P1Q8NEA9 526 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 CCDC148Q8NFR7 591 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 SYAP1Q96A49 352 aaPredicted RBP21.89■■□□□ 1.09
CLN3-233ENST00000568452 TEPSINQ96N21 525 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 RIOX1Q9H6W3 641 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 ARHGEF10LQ9HCE6 1279 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 GINM1Q9NU53 330 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 ZBTB21Q9ULJ3 1066 aa21.89■■□□□ 1.09
CLN3-233ENST00000568452 hCG_1984214I3L0E3 225 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 GSE1Q14687 1217 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 CCDC96Q2M329 555 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 SHROOM1Q2M3G4 852 aaPredicted RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 SLC35G1Q2M3R5 365 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 MIGA2Q7L4E1 593 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 RASGRP2Q7LDG7 609 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 SIAH1Q8IUQ4 282 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 CDAN1Q8IWY9 1227 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 ZNF713Q8N859 430 aaPredicted RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 CCDC12Q8WUD4 166 aaPredicted RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 PIBF1Q8WXW3 757 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 GZF1Q9H116 711 aaPredicted RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 DEFB129Q9H1M3 183 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 FRMPD2Q68DX3 1309 aaPredicted RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 UTRNP46939 3433 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 CAP2P40123 477 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 NASPP49321 788 aaPredicted RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 CEBPZQ03701 1054 aaKnown RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 SLFN13Q68D06 897 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 GALNT17Q6IS24 598 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 CAVIN1Q6NZI2 390 aaKnown RBP21.88■■□□□ 1.09
CLN3-233ENST00000568452 TRPM4Q8TD43 1214 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 GPCPD1Q9NPB8 672 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 PPP2R3BQ9Y5P8 575 aa21.88■■□□□ 1.09
CLN3-233ENST00000568452 DDNO94850 711 aaPredicted RBP21.87■■□□□ 1.09
CLN3-233ENST00000568452 ASNSP08243 561 aa21.87■■□□□ 1.09
CLN3-233ENST00000568452 EPS15P42566 896 aa21.87■■□□□ 1.09
CLN3-233ENST00000568452 JAG1P78504 1218 aa21.87■■□□□ 1.09
CLN3-233ENST00000568452 ANO1Q5XXA6 986 aa21.87■■□□□ 1.09
CLN3-233ENST00000568452 KCNG4Q8TDN1 519 aa21.87■■□□□ 1.09
CLN3-233ENST00000568452 BARHL2Q9NY43 387 aa21.87■■□□□ 1.09
CLN3-233ENST00000568452 ASTN2O75129 1339 aaPredicted RBP21.87■■□□□ 1.09
CLN3-233ENST00000568452 SLC1A4P43007 532 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 STK38Q15208 465 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 RILPL1Q5EBL4 403 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 ANGEL2Q5VTE6 544 aaKnown RBP21.86■■□□□ 1.09
CLN3-233ENST00000568452 DCAF15Q66K64 600 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 HEATR3Q7Z4Q2 680 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 SHISA4Q96DD7 197 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 GMCL1Q96IK5 515 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 UBA5Q9GZZ9 404 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 SH2D4AQ9H788 454 aa21.86■■□□□ 1.09
CLN3-233ENST00000568452 ADARB2Q9NS39 739 aaKnown RBP21.86■■□□□ 1.09
CLN3-233ENST00000568452 F5H6K3 240 aa21.85■■□□□ 1.09
CLN3-233ENST00000568452 KLRC3Q07444 240 aa21.85■■□□□ 1.09
CLN3-233ENST00000568452 DPY19L2Q6NUT2 758 aa21.85■■□□□ 1.09
CLN3-233ENST00000568452 LINC00301Q8NCQ3 95 aa21.85■■□□□ 1.09
CLN3-233ENST00000568452 STXBP3O00186 592 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 NR5A1Q13285 461 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 SF3A1Q15459 793 aaKnown RBP21.84■■□□□ 1.09
CLN3-233ENST00000568452 WWC2Q6AWC2 1192 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 HOMER1Q86YM7 354 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 OXER1Q8TDS5 423 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 GPKOWQ92917 476 aaPredicted RBP eCLIP21.84■■□□□ 1.09
CLN3-233ENST00000568452 PIGSQ96S52 555 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 FTOQ9C0B1 505 aaKnown RBP eCLIP21.84■■□□□ 1.09
CLN3-233ENST00000568452 CPVLQ9H3G5 476 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 VAT1LQ9HCJ6 419 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 GOPCQ9HD26 462 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 CLIC4Q9Y696 253 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 PITPNM2Q9BZ72 1349 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 ZC3H4Q9UPT8 1303 aaKnown RBP21.84■■□□□ 1.09
CLN3-233ENST00000568452 RAD21O60216 631 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 GGA3Q9NZ52 723 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 ISY1Q9ULR0 285 aaKnown RBP21.84■■□□□ 1.09
CLN3-233ENST00000568452 NOL7Q9UMY1 257 aaKnown RBP21.84■■□□□ 1.09
CLN3-233ENST00000568452 PCDHA4Q9UN74 947 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 TMX2Q9Y320 296 aa21.84■■□□□ 1.09
CLN3-233ENST00000568452 PHF20L1A8MW92 1017 aa21.83■■□□□ 1.08
CLN3-233ENST00000568452 SPTLC2O15270 562 aa21.83■■□□□ 1.08
CLN3-233ENST00000568452 NDUFB10O96000 172 aa21.83■■□□□ 1.08
CLN3-233ENST00000568452 VEGFAP15692 232 aaPredicted RBP21.83■■□□□ 1.08
CLN3-233ENST00000568452 NPY5RQ15761 445 aa21.83■■□□□ 1.08
CLN3-233ENST00000568452 KCTD1Q719H9 257 aa21.83■■□□□ 1.08
CLN3-233ENST00000568452 JMYQ8N9B5 988 aa21.83■■□□□ 1.08
CLN3-233ENST00000568452 DAGLBQ8NCG7 672 aa21.83■■□□□ 1.08
CLN3-233ENST00000568452 SCAF8Q9UPN6 1271 aaKnown RBP21.83■■□□□ 1.08
CLN3-233ENST00000568452 BAZ2BQ9UIF8 2168 aaKnown RBP21.82■■□□□ 1.08
CLN3-233ENST00000568452 PNMA6FA0A0J9YX94 578 aa21.82■■□□□ 1.08
CLN3-233ENST00000568452 CTNND1O60716 968 aaKnown RBP21.82■■□□□ 1.08
CLN3-233ENST00000568452 ME1P48163 572 aa21.82■■□□□ 1.08
CLN3-233ENST00000568452 NAPAP54920 295 aa21.82■■□□□ 1.08
CLN3-233ENST00000568452 SLC39A14Q15043 492 aa21.82■■□□□ 1.08
CLN3-233ENST00000568452 ADGRF4Q8IZF3 695 aa21.82■■□□□ 1.08
CLN3-233ENST00000568452 BLIDQ8IZY5 108 aa21.82■■□□□ 1.08
CLN3-233ENST00000568452 BICD2Q8TD16 824 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms