RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 LORP23490 312 aaPredicted RBP7.58□□□□□ -1.2
VPS39-209ENST00000568029 RAD51AP2Q09MP3 1159 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 AP3B2Q13367 1082 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 LINC00114Q6XXX2 140 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.58□□□□□ -1.2
VPS39-209ENST00000568029 RRAGCQ9HB90 399 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 GPN3Q9UHW5 284 aaPredicted RBP7.58□□□□□ -1.2
VPS39-209ENST00000568029 GGT7Q9UJ14 662 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 MKL2Q9ULH7 1088 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 C10orf71Q711Q0 1435 aa7.58□□□□□ -1.2
VPS39-209ENST00000568029 A0A0G2JLW4 131 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 GNB5O14775 395 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 TM4SF5O14894 197 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 FSCN2O14926 492 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 NME2P22392 152 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 TNNT2P45379 298 aaPredicted RBP7.57□□□□□ -1.2
VPS39-209ENST00000568029 MTHFSP49914 203 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 C19orf57Q0VDD7 668 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 FSTL1Q12841 308 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 C9orf131Q5VYM1 1079 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 RUNDC1Q96C34 613 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 DDX41Q9UJV9 622 aaKnown RBP7.57□□□□□ -1.2
VPS39-209ENST00000568029 C4AP0C0L4 1744 aa7.57□□□□□ -1.2
VPS39-209ENST00000568029 LINC01387J3KSC0 135 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 APAF1O14727 1248 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 FBXO24O75426 580 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 CELA3AP09093 270 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 ERCC5P28715 1186 aaPredicted RBP7.56□□□□□ -1.2
VPS39-209ENST00000568029 LIG3P49916 1009 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 SLFN5Q08AF3 891 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 SETDB1Q15047 1291 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 AGMOQ6ZNB7 445 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 ARHGAP27Q6ZUM4 889 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 CCDC146Q8IYE0 955 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 C16orf71Q8IYS4 520 aaPredicted RBP7.56□□□□□ -1.2
VPS39-209ENST00000568029 ZNF654Q8IZM8 581 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 ZSCAN1Q8NBB4 408 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 TMEM74Q96NL1 305 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 EMILIN2Q9BXX0 1053 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 PNNQ9H307 717 aaKnown RBP7.56□□□□□ -1.2
VPS39-209ENST00000568029 KCNQ5Q9NR82 932 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 CYP8B1Q9UNU6 501 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 PALLDQ8WX93 1383 aa7.56□□□□□ -1.2
VPS39-209ENST00000568029 ZNF521Q96K83 1311 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 CYP11A1P05108 521 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 ARNTP27540 789 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 SUZ12Q15022 739 aaKnown RBP7.55□□□□□ -1.2
VPS39-209ENST00000568029 LRRC14Q15048 493 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 DUSP27Q5VZP5 1158 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 TTBK2Q6IQ55 1244 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 CCDC84Q86UT8 332 aaPredicted RBP7.55□□□□□ -1.2
VPS39-209ENST00000568029 USP48Q86UV5 1035 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 FBXO11Q86XK2 927 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 RELL1Q8IUW5 271 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 DMRTC2Q8IXT2 367 aaPredicted RBP7.55□□□□□ -1.2
VPS39-209ENST00000568029 PHC3Q8NDX5 983 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 LTV1Q96GA3 475 aaPredicted RBP7.55□□□□□ -1.2
VPS39-209ENST00000568029 NRSN2Q9GZP1 204 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 CD163L1Q9NR16 1453 aa7.55□□□□□ -1.2
VPS39-209ENST00000568029 FYB1O15117 783 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 DPEP1P16444 411 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 BMP6P22004 513 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 RAC1P63000 192 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 SNRPNP63162 240 aaKnown RBP7.54□□□□□ -1.2
VPS39-209ENST00000568029 PCNX4Q63HM2 1172 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 NME9Q86XW9 330 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 WDR63Q8IWG1 891 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 SULF2Q8IWU5 870 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 TRMT2AQ8IZ69 625 aaKnown RBP7.54□□□□□ -1.2
VPS39-209ENST00000568029 KCNH5Q8NCM2 988 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 TRIM11Q96F44 468 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 RHOVQ96L33 236 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 TRIM56Q9BRZ2 755 aaKnown RBP7.54□□□□□ -1.2
VPS39-209ENST00000568029 KBTBD4Q9NVX7 518 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 NOP53Q9NZM5 478 aaKnown RBP7.54□□□□□ -1.2
VPS39-209ENST00000568029 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.54□□□□□ -1.2
VPS39-209ENST00000568029 A0A1W2PP64 1363 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 PLEKHG2Q9H7P9 1386 aa7.54□□□□□ -1.2
VPS39-209ENST00000568029 VIRMAQ69YN4 1812 aaKnown RBP7.54□□□□□ -1.2
VPS39-209ENST00000568029 A0A0A0MRY4 1105 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 DEAF1O75398 565 aaPredicted RBP7.53□□□□□ -1.2
VPS39-209ENST00000568029 PAGE1O75459 146 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 MMP10P09238 476 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 U2AF1L5P0DN76 240 aaPredicted RBP7.53□□□□□ -1.2
VPS39-209ENST00000568029 U2AF1Q01081 240 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS39-209ENST00000568029 RASSF7Q02833 373 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 ZNF252P-AS1Q0IIN9 211 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 HP1BP3Q5SSJ5 553 aaPredicted RBP7.53□□□□□ -1.2
VPS39-209ENST00000568029 TRAPPC3LQ5T215 181 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 PODNQ7Z5L7 613 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 PDZD3Q86UT5 571 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 FMR1NBQ8N0W7 255 aaPredicted RBP7.53□□□□□ -1.2
VPS39-209ENST00000568029 BEND7Q8N7W2 519 aaPredicted RBP7.53□□□□□ -1.2
VPS39-209ENST00000568029 LINC00116Q8NCU8 138 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 SMC1BQ8NDV3 1235 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 CCSER2Q9H7U1 834 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 CACNA2D2Q9NY47 1150 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 RNF181Q9P0P0 153 aa7.53□□□□□ -1.2
VPS39-209ENST00000568029 DLL1O00548 723 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 KCNA3P22001 575 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms