RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CBFA2T2O43439 604 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 DIAPH1O60610 1272 aaKnown RBP6.91□□□□□ -1.3
LINC00560-201ENST00000564593 SFRP5Q5T4F7 317 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 FBXL6Q8N531 539 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 COX4I2Q96KJ9 171 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 FGD4Q96M96 766 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 MFSD14AQ96MC6 490 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 GBP3Q9H0R5 595 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 SUSD2Q9UGT4 822 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 FBXL21Q9UKT6 434 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 ZNF451Q9Y4E5 1061 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 IQCA1LA6NCM1 817 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 AGRPO00253 132 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 LRRN2O75325 713 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 CBX7O95931 251 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 CD247P20963 164 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 NBPF9Q3BBW0 867 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 CYP27C1Q4G0S4 372 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 SLC51AQ86UW1 340 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 SHISA5Q8N114 240 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 PPP1R14AQ96A00 147 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 KLHL25Q9H0H3 589 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 CWC22Q9HCG8 908 aaKnown RBP6.91□□□□□ -1.3
LINC00560-201ENST00000564593 LRP2BPQ9P2M1 347 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 GTF2IRD1Q9UHL9 959 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 PCDHB12Q9Y5F1 795 aa6.91□□□□□ -1.3
LINC00560-201ENST00000564593 PPM1BO75688 479 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 CYP27A1Q02318 531 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 RNF43Q68DV7 783 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 ZNF765Q7L2R6 523 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 FAM214BQ7L5A3 538 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 LRRC47Q8N1G4 583 aaKnown RBP6.9□□□□□ -1.31
LINC00560-201ENST00000564593 THAP3Q8WTV1 239 aaPredicted RBP6.9□□□□□ -1.31
LINC00560-201ENST00000564593 SPATA9Q9BWV2 254 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 KANSL2Q9H9L4 492 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 GP6Q9HCN6 339 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 KCNH3Q9ULD8 1083 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 SUGT1Q9Y2Z0 365 aa6.9□□□□□ -1.31
LINC00560-201ENST00000564593 FAM170BA6NMN3 283 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 RBAK-RBAKDNI3L0D1 243 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 SHOXO15266 292 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 C2orf27AQ580R0 203 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 DUSP27Q5VZP5 1158 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 LRRN4CLQ8ND94 238 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 HEXIM2Q96MH2 286 aaKnown RBP6.89□□□□□ -1.31
LINC00560-201ENST00000564593 WHRNQ9P202 907 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 APEX2Q9UBZ4 518 aa6.89□□□□□ -1.31
LINC00560-201ENST00000564593 CLSTN1O94985 981 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 ITGA4P13612 1032 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 HSD3B2P26439 372 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 KIR3DL1P43629 444 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 IRAK1P51617 712 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 NFIAQ12857 509 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 NOL9Q5SY16 702 aaKnown RBP6.88□□□□□ -1.31
LINC00560-201ENST00000564593 SGSM3Q96HU1 749 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 PRDM14Q9GZV8 571 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 LEMD3Q9Y2U8 911 aa6.88□□□□□ -1.31
LINC00560-201ENST00000564593 IGF2BP3O00425 579 aaKnown RBP eCLIP6.87□□□□□ -1.31
LINC00560-201ENST00000564593 ENPP3O14638 875 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 F13BP05160 661 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 SNW1Q13573 536 aaKnown RBP6.87□□□□□ -1.31
LINC00560-201ENST00000564593 EGFLAMQ63HQ2 1017 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 JMYQ8N9B5 988 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 DTWD2Q8NBA8 298 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 ADCY4Q8NFM4 1077 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 BRF1Q92994 677 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 Q96M66 194 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 FANCLQ9NW38 375 aa6.87□□□□□ -1.31
LINC00560-201ENST00000564593 A0A1W2PQU0 124 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ESYT3A0FGR9 886 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 GNAT3A8MTJ3 354 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 PRR33A8MZF0 331 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 WDR64B1ANS9 1081 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 NOP56O00567 594 aaKnown RBP6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ITGAVP06756 1048 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 FAM153BP0C7A2 387 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ZNF445P59923 1031 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 SQSTM1Q13501 440 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ARHGAP27Q6ZUM4 889 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 HOMER1Q86YM7 354 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ZNF513Q8N8E2 541 aaPredicted RBP6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ZBTB38Q8NAP3 1195 aaPredicted RBP6.86□□□□□ -1.31
LINC00560-201ENST00000564593 BVESQ8NE79 360 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 APPBP2Q92624 585 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 DBNDD2Q9BQY9 259 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ASCC2Q9H1I8 757 aaPredicted RBP6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ATG3Q9NT62 314 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 GFOD1Q9NXC2 390 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 AKT3Q9Y243 479 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 A0A087WZG4 1122 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 CDC45O75419 566 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 ZNF865P0CJ78 1059 aaPredicted RBP6.86□□□□□ -1.31
LINC00560-201ENST00000564593 SSTR4P31391 388 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 CD97P48960 835 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 C22orf34Q6ZV56 151 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 MFSD4AQ8N468 514 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 RCC1LQ96I51 464 aaKnown RBP6.86□□□□□ -1.31
LINC00560-201ENST00000564593 LGR4Q9BXB1 951 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 OSBPL1AQ9BXW6 950 aa6.86□□□□□ -1.31
LINC00560-201ENST00000564593 NOL6Q9H6R4 1146 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms