RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 LARP6Q9BRS8 491 aaKnown RBP24.06■■□□□ 1.44
CLN3-212ENST00000564574 MYL10Q9BUA6 226 aa24.06■■□□□ 1.44
CLN3-212ENST00000564574 TSHZ2Q9NRE2 1034 aa24.06■■□□□ 1.44
CLN3-212ENST00000564574 MTMR7Q9Y216 660 aa24.06■■□□□ 1.44
CLN3-212ENST00000564574 CCDC196A0A1B0GTZ2 297 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 MANSC4A6NHS7 340 aaPredicted RBP24.05■■□□□ 1.44
CLN3-212ENST00000564574 FAM155AB1AL88 458 aaPredicted RBP24.05■■□□□ 1.44
CLN3-212ENST00000564574 PFKFB2O60825 505 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 VCAM1P19320 739 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 GNAQP50148 359 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 ZNF543Q08ER8 600 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 ME3Q16798 604 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 RTN1Q16799 776 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 CCDC96Q2M329 555 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 KIAA1755Q5JYT7 1200 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 SPICE1Q8N0Z3 855 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 MS4A4AQ96JQ5 239 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 SLKQ9H2G2 1235 aaPredicted RBP24.05■■□□□ 1.44
CLN3-212ENST00000564574 HPS5Q9UPZ3 1129 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 PARP14Q460N5 1801 aa24.05■■□□□ 1.44
CLN3-212ENST00000564574 PALM3A6NDB9 673 aaPredicted RBP24.04■■□□□ 1.44
CLN3-212ENST00000564574 GADL1Q6ZQY3 521 aa24.04■■□□□ 1.44
CLN3-212ENST00000564574 PAXIP1Q6ZW49 1069 aaPredicted RBP24.04■■□□□ 1.44
CLN3-212ENST00000564574 HSCBQ8IWL3 235 aa24.04■■□□□ 1.44
CLN3-212ENST00000564574 MAD2L2Q9UI95 211 aa24.04■■□□□ 1.44
CLN3-212ENST00000564574 CCL15-CCL14A0A0B4J2E2 113 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 TESPA1A2RU30 521 aaPredicted RBP24.03■■□□□ 1.44
CLN3-212ENST00000564574 RXRAP19793 462 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 INHBEP58166 350 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 MKRN3Q13064 507 aaKnown RBP24.03■■□□□ 1.44
CLN3-212ENST00000564574 PABPC4Q13310 644 aaKnown RBP eCLIP24.03■■□□□ 1.44
CLN3-212ENST00000564574 MOGSQ13724 837 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 CCL15Q16663 113 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 FAM83BQ5T0W9 1011 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 LZTS2Q9BRK4 669 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 AGTPBP1Q9UPW5 1226 aa24.03■■□□□ 1.44
CLN3-212ENST00000564574 DHX16O60231 1041 aaKnown RBP24.02■■□□□ 1.44
CLN3-212ENST00000564574 PLA2G6O60733 806 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 STK3Q13188 491 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 NOGQ13253 232 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 DGKZQ13574 1117 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 CYP4F22Q6NT55 531 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 RAB11FIP4Q86YS3 637 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 CCDC144CPQ8IYA2 1237 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 GTF3C6Q969F1 213 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 RPAP3Q9H6T3 665 aaPredicted RBP24.02■■□□□ 1.44
CLN3-212ENST00000564574 FEM1BQ9UK73 627 aa24.02■■□□□ 1.44
CLN3-212ENST00000564574 USP17L15C9J2P7 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L13C9JLJ4 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L11C9JVI0 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L18D6R9N7 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L22D6RA61 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L17D6RBQ6 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L19D6RCP7 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L20D6RJB6 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 K7ELQ4 463 aaPredicted RBP24.01■■□□□ 1.43
CLN3-212ENST00000564574 LARGE1O95461 756 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 SMARCA1P28370 1054 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 HOXA7P31268 230 aaPredicted RBP24.01■■□□□ 1.43
CLN3-212ENST00000564574 CCT2P78371 535 aaKnown RBP24.01■■□□□ 1.43
CLN3-212ENST00000564574 USP17L24Q0WX57 530 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 SCRN1Q12765 414 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 KCTD1Q719H9 257 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 RASGRP2Q7LDG7 609 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 FAM160B2Q86V87 743 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 CHURC1Q8WUH1 139 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 TMX3Q96JJ7 454 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 CAPNS2Q96L46 248 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 NUP88Q99567 741 aaPredicted RBP24.01■■□□□ 1.43
CLN3-212ENST00000564574 ISY1Q9ULR0 285 aaKnown RBP24.01■■□□□ 1.43
CLN3-212ENST00000564574 SLC45A1Q9Y2W3 748 aa24.01■■□□□ 1.43
CLN3-212ENST00000564574 FRMPD2Q68DX3 1309 aaPredicted RBP24.01■■□□□ 1.43
CLN3-212ENST00000564574 TMEM232C9JQI7 657 aa24■■□□□ 1.43
CLN3-212ENST00000564574 KLRF2D3W0D1 207 aa24■■□□□ 1.43
CLN3-212ENST00000564574 STAT2P52630 851 aa24■■□□□ 1.43
CLN3-212ENST00000564574 SREBF2Q12772 1141 aa24■■□□□ 1.43
CLN3-212ENST00000564574 CPLX2Q6PUV4 134 aaKnown RBP24■■□□□ 1.43
CLN3-212ENST00000564574 BTNL9Q6UXG8 535 aa24■■□□□ 1.43
CLN3-212ENST00000564574 CATSPERGQ6ZRH7 1159 aa24■■□□□ 1.43
CLN3-212ENST00000564574 TMTC3Q6ZXV5 915 aa24■■□□□ 1.43
CLN3-212ENST00000564574 ANKRD23Q86SG2 305 aa24■■□□□ 1.43
CLN3-212ENST00000564574 REM2Q8IYK8 340 aaPredicted RBP24■■□□□ 1.43
CLN3-212ENST00000564574 BRI3BPQ8WY22 251 aa24■■□□□ 1.43
CLN3-212ENST00000564574 TANGO6Q9C0B7 1094 aa24■■□□□ 1.43
CLN3-212ENST00000564574 GPCPD1Q9NPB8 672 aa24■■□□□ 1.43
CLN3-212ENST00000564574 FAM217BQ9NTX9 383 aaPredicted RBP24■■□□□ 1.43
CLN3-212ENST00000564574 RLFQ13129 1914 aa24■■□□□ 1.43
CLN3-212ENST00000564574 GOLGA8HP0CJ92 632 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 CDC27P30260 824 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 ANP32AP39687 249 aaKnown RBP23.99■■□□□ 1.43
CLN3-212ENST00000564574 BECN1Q14457 450 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 TREML2Q5T2D2 321 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 GPAT2Q6NUI2 795 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 STAG2Q8N3U4 1231 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 ZCCHC17Q9NP64 241 aaKnown RBP23.99■■□□□ 1.43
CLN3-212ENST00000564574 MYH6P13533 1939 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 MYPNQ86TC9 1320 aa23.99■■□□□ 1.43
CLN3-212ENST00000564574 CPLX1O14810 134 aa23.98■■□□□ 1.43
CLN3-212ENST00000564574 ADD1P35611 737 aaKnown RBP23.98■■□□□ 1.43
CLN3-212ENST00000564574 SPZ1Q9BXG8 430 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms