RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SLKQ9H2G2 1235 aaPredicted RBP19.36■□□□□ 0.69
VPS4A-202ENST00000562754 SH2B1Q9NRF2 756 aaPredicted RBP19.36■□□□□ 0.69
VPS4A-202ENST00000562754 MAD2L2Q9UI95 211 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 GOLGA8HP0CJ92 632 aa19.35■□□□□ 0.69
VPS4A-202ENST00000562754 ANP32AP39687 249 aaKnown RBP19.35■□□□□ 0.69
VPS4A-202ENST00000562754 ZNF157P51786 506 aaPredicted RBP19.35■□□□□ 0.69
VPS4A-202ENST00000562754 ZNF543Q08ER8 600 aa19.35■□□□□ 0.69
VPS4A-202ENST00000562754 MKRN3Q13064 507 aaKnown RBP19.35■□□□□ 0.69
VPS4A-202ENST00000562754 CCDC96Q2M329 555 aa19.35■□□□□ 0.69
VPS4A-202ENST00000562754 CTCFLQ8NI51 663 aaPredicted RBP19.35■□□□□ 0.69
VPS4A-202ENST00000562754 PALM3A6NDB9 673 aaPredicted RBP19.34■□□□□ 0.69
VPS4A-202ENST00000562754 PLEKHA8P1O95397 391 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 SLC10A3P09131 477 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 PARP1P09874 1014 aaKnown RBP19.34■□□□□ 0.69
VPS4A-202ENST00000562754 ZBTB48P10074 688 aaPredicted RBP19.34■□□□□ 0.69
VPS4A-202ENST00000562754 VCAM1P19320 739 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 SLC1A4P43007 532 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 MOGSQ13724 837 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 SLC35G1Q2M3R5 365 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 ASPRV1Q53RT3 343 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 FAM83BQ5T0W9 1011 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 KCTD1Q719H9 257 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 CCDC83Q8IWF9 413 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 LPAR1Q92633 364 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 HHIPL1Q96JK4 782 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 CREBZFQ9NS37 354 aa19.34■□□□□ 0.69
VPS4A-202ENST00000562754 RLFQ13129 1914 aa19.33■□□□□ 0.69
VPS4A-202ENST00000562754 WDR46O15213 610 aaKnown RBP19.33■□□□□ 0.68
VPS4A-202ENST00000562754 BMP3P12645 472 aa19.33■□□□□ 0.68
VPS4A-202ENST00000562754 ADD1P35611 737 aaKnown RBP19.33■□□□□ 0.68
VPS4A-202ENST00000562754 TTBK2Q6IQ55 1244 aa19.33■□□□□ 0.68
VPS4A-202ENST00000562754 TMTC3Q6ZXV5 915 aa19.33■□□□□ 0.68
VPS4A-202ENST00000562754 CPVLQ9H3G5 476 aa19.33■□□□□ 0.68
VPS4A-202ENST00000562754 GPCPD1Q9NPB8 672 aa19.33■□□□□ 0.68
VPS4A-202ENST00000562754 BAZ2BQ9UIF8 2168 aaKnown RBP19.32■□□□□ 0.68
VPS4A-202ENST00000562754 FAM155AB1AL88 458 aaPredicted RBP19.32■□□□□ 0.68
VPS4A-202ENST00000562754 DTNBO60941 627 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 KIF5BP33176 963 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 SNAPC2Q13487 334 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 CUL4AQ13619 759 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 GADL1Q6ZQY3 521 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 NBPF11Q86T75 865 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 CMTR1Q8N1G2 835 aaKnown RBP19.32■□□□□ 0.68
VPS4A-202ENST00000562754 MS4A4AQ96JQ5 239 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 RBM28Q9NW13 759 aaKnown RBP19.32■□□□□ 0.68
VPS4A-202ENST00000562754 TMOD4Q9NZQ9 345 aa19.32■□□□□ 0.68
VPS4A-202ENST00000562754 CNTNAP5Q8WYK1 1306 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 RASSF10A6NK89 507 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 KLRF2D3W0D1 207 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 CTDNEP1O95476 244 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 FUT2Q10981 343 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 NTRK3Q16288 839 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 TREML2Q5T2D2 321 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 GPATCH4Q5T3I0 446 aaKnown RBP19.31■□□□□ 0.68
VPS4A-202ENST00000562754 SRBD1Q8N5C6 995 aaKnown RBP19.31■□□□□ 0.68
VPS4A-202ENST00000562754 PROCA1Q8NCQ7 364 aaPredicted RBP19.31■□□□□ 0.68
VPS4A-202ENST00000562754 RPAP3Q9H6T3 665 aaPredicted RBP19.31■□□□□ 0.68
VPS4A-202ENST00000562754 ISY1Q9ULR0 285 aaKnown RBP19.31■□□□□ 0.68
VPS4A-202ENST00000562754 MYH6P13533 1939 aa19.31■□□□□ 0.68
VPS4A-202ENST00000562754 TMEM232C9JQI7 657 aa19.3■□□□□ 0.68
VPS4A-202ENST00000562754 GTF2A2P52657 109 aa19.3■□□□□ 0.68
VPS4A-202ENST00000562754 BECN1Q14457 450 aa19.3■□□□□ 0.68
VPS4A-202ENST00000562754 PPP2R5BQ15173 497 aa19.3■□□□□ 0.68
VPS4A-202ENST00000562754 NSUN7Q8NE18 718 aaKnown RBP19.3■□□□□ 0.68
VPS4A-202ENST00000562754 BRI3BPQ8WY22 251 aa19.3■□□□□ 0.68
VPS4A-202ENST00000562754 UBA5Q9GZZ9 404 aa19.3■□□□□ 0.68
VPS4A-202ENST00000562754 FBXO28Q9NVF7 368 aa19.3■□□□□ 0.68
VPS4A-202ENST00000562754 CCL15-CCL14A0A0B4J2E2 113 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 CCDC196A0A1B0GTZ2 297 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 CYTH3O43739 400 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 PPFIA3O75145 1194 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 CETPP11597 493 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 SLC16A2P36021 539 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 GNAQP50148 359 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 CCL15Q16663 113 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 CYP4F22Q6NT55 531 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 GPAT2Q6NUI2 795 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 BTNL9Q6UXG8 535 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 TANGO6Q9C0B7 1094 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 AGTPBP1Q9UPW5 1226 aa19.29■□□□□ 0.68
VPS4A-202ENST00000562754 A0A0G2JMZ2 1700 aa19.28■□□□□ 0.68
VPS4A-202ENST00000562754 CPLX1O14810 134 aa19.28■□□□□ 0.68
VPS4A-202ENST00000562754 JAK2O60674 1132 aa19.28■□□□□ 0.68
VPS4A-202ENST00000562754 IFNAR1P17181 557 aa19.28■□□□□ 0.68
VPS4A-202ENST00000562754 HTRA3P83110 453 aa19.28■□□□□ 0.68
VPS4A-202ENST00000562754 PAXIP1Q6ZW49 1069 aaPredicted RBP19.28■□□□□ 0.68
VPS4A-202ENST00000562754 CCDC102AQ96A19 550 aa19.28■□□□□ 0.68
VPS4A-202ENST00000562754 SPZ1Q9BXG8 430 aa19.28■□□□□ 0.68
VPS4A-202ENST00000562754 PTPDC1A2A3K4 754 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 DHX16O60231 1041 aaKnown RBP19.27■□□□□ 0.68
VPS4A-202ENST00000562754 PLA2G6O60733 806 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 SLC4A3P48751 1232 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 STAT2P52630 851 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 SYDE2Q5VT97 1194 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 FASTKD5Q7L8L6 764 aaKnown RBP19.27■□□□□ 0.68
VPS4A-202ENST00000562754 CCDC82Q8N4S0 544 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 SMARCC2Q8TAQ2 1214 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 PHKBQ93100 1093 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 ZIC5Q96T25 663 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 LZTS2Q9BRK4 669 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms