RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ADGRE2Q9UHX3 823 aa5.35□□□□□ -1.55
VPS35-203ENST00000562420 A0A1W2PQH9 124 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 SIGLEC6O43699 453 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 ESR1P03372 595 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 SSBP05455 408 aaKnown RBP eCLIP5.34□□□□□ -1.55
VPS35-203ENST00000562420 ENDOUP21128 410 aaKnown RBP5.34□□□□□ -1.55
VPS35-203ENST00000562420 TPP2P29144 1249 aaPredicted RBP5.34□□□□□ -1.55
VPS35-203ENST00000562420 ZP2Q05996 745 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 AUHQ13825 339 aaKnown RBP5.34□□□□□ -1.55
VPS35-203ENST00000562420 PLCL1Q15111 1095 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 ZYXQ15942 572 aaKnown RBP5.34□□□□□ -1.55
VPS35-203ENST00000562420 RUFY4Q6ZNE9 571 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 MCF2L2Q86YR7 1114 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 C7orf61Q8IZ16 206 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 UBE2FQ969M7 185 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 MKRN2Q9H000 416 aaKnown RBP5.34□□□□□ -1.55
VPS35-203ENST00000562420 ZSWIM5Q9P217 1185 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 PRKAG3Q9UGI9 489 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 PCDHB12Q9Y5F1 795 aa5.34□□□□□ -1.55
VPS35-203ENST00000562420 LTBP3Q9NS15 1303 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 SHOXO15266 292 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 LRRN2O75325 713 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 ZNF143P52747 638 aaPredicted RBP5.33□□□□□ -1.56
VPS35-203ENST00000562420 ZNF792Q3KQV3 632 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 NAALADL2Q58DX5 795 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 PPFIBP1Q86W92 1011 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 FAM169BQ8N8A8 192 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 FLAD1Q8NFF5 587 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 PI4K2BQ8TCG2 481 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 ARMC5Q96C12 935 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 DUSP13Q9UII6 198 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 ZNF281Q9Y2X9 895 aa5.33□□□□□ -1.56
VPS35-203ENST00000562420 A0A087WZG4 1122 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 SHISA3A0PJX4 238 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 C9IYK1 514 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 ITGB5P18084 799 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 CD96P40200 585 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 CLEC16AQ2KHT3 1053 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 RNF111Q6ZNA4 994 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 ATG4DQ86TL0 474 aaPredicted RBP5.32□□□□□ -1.56
VPS35-203ENST00000562420 CCDC144CPQ8IYA2 1237 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 ALPK1Q96QP1 1244 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 PRDM14Q9GZV8 571 aa5.32□□□□□ -1.56
VPS35-203ENST00000562420 CARS2Q9HA77 564 aaKnown RBP5.32□□□□□ -1.56
VPS35-203ENST00000562420 MBNL3Q9NUK0 354 aaKnown RBP5.32□□□□□ -1.56
VPS35-203ENST00000562420 RNASE1P07998 156 aaKnown RBP5.31□□□□□ -1.56
VPS35-203ENST00000562420 JUNBP17275 347 aaPredicted RBP5.31□□□□□ -1.56
VPS35-203ENST00000562420 DNAJA1P31689 397 aaKnown RBP5.31□□□□□ -1.56
VPS35-203ENST00000562420 SLC7A5Q01650 507 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 NCAPHQ15003 741 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 TMC3Q7Z5M5 1100 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 LINC00116Q8NCU8 138 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 ANAPC16Q96DE5 110 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 ZNF512BQ96KM6 892 aaPredicted RBP5.31□□□□□ -1.56
VPS35-203ENST00000562420 ZNF408Q9H9D4 720 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 CHST7Q9NS84 486 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 ACTR10Q9NZ32 417 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 ADAMTS6Q9UKP5 1117 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 FHOD1Q9Y613 1164 aa5.31□□□□□ -1.56
VPS35-203ENST00000562420 BIN1O00499 593 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 CBFA2T2O43439 604 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 PRAMEF1O95521 474 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 GSNP06396 782 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 NAT2P11245 290 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 CD247P20963 164 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 LTKP29376 864 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 BMP8BP34820 402 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 GDNFP39905 211 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 TEKQ02763 1124 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 EGR3Q06889 387 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 SNW1Q13573 536 aaKnown RBP5.3□□□□□ -1.56
VPS35-203ENST00000562420 AXDND1Q5T1B0 1012 aaPredicted RBP5.3□□□□□ -1.56
VPS35-203ENST00000562420 CREG2Q8IUH2 290 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 KLHL6Q8WZ60 621 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 TCTN2Q96GX1 697 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 HAUS7Q99871 368 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 KLHL25Q9H0H3 589 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 RC3H2Q9HBD1 1191 aaKnown RBP5.3□□□□□ -1.56
VPS35-203ENST00000562420 GP6Q9HCN6 339 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 WHRNQ9P202 907 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 TMEM59LQ9UK28 342 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 PCDHA11Q9Y5I1 949 aa5.3□□□□□ -1.56
VPS35-203ENST00000562420 SMAD7O15105 426 aaKnown RBP5.29□□□□□ -1.56
VPS35-203ENST00000562420 ITGA4P13612 1032 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 PCBP3P57721 371 aaKnown RBP5.29□□□□□ -1.56
VPS35-203ENST00000562420 TCEAL1Q15170 157 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 SF3A1Q15459 793 aaKnown RBP5.29□□□□□ -1.56
VPS35-203ENST00000562420 GNPTABQ3T906 1256 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 NBPF6Q5VWK0 638 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 TDRD10Q5VZ19 366 aaKnown RBP5.29□□□□□ -1.56
VPS35-203ENST00000562420 LRRN4CLQ8ND94 238 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 DHX38Q92620 1227 aaKnown RBP5.29□□□□□ -1.56
VPS35-203ENST00000562420 NBPF4Q96M43 638 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 GBP3Q9H0R5 595 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 FBXL21Q9UKT6 434 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 CTNND2Q9UQB3 1225 aa5.29□□□□□ -1.56
VPS35-203ENST00000562420 ZNF205O95201 554 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 ETFBP38117 255 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 RBM10P98175 930 aaKnown RBP5.28□□□□□ -1.56
VPS35-203ENST00000562420 DUSP4Q13115 394 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms