RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ATL3Q6DD88 541 aa24.54■■□□□ 1.52
CLN3-209ENST00000561689 VAT1LQ9HCJ6 419 aa24.54■■□□□ 1.52
CLN3-209ENST00000561689 NR5A1Q13285 461 aa24.54■■□□□ 1.52
CLN3-209ENST00000561689 ASPRV1Q53RT3 343 aa24.54■■□□□ 1.52
CLN3-209ENST00000561689 GPKOWQ92917 476 aaPredicted RBP eCLIP24.54■■□□□ 1.52
CLN3-209ENST00000561689 SPZ1Q9BXG8 430 aa24.54■■□□□ 1.52
CLN3-209ENST00000561689 DEFB129Q9H1M3 183 aa24.54■■□□□ 1.52
CLN3-209ENST00000561689 ZNF543Q08ER8 600 aa24.53■■□□□ 1.52
CLN3-209ENST00000561689 ANGEL2Q5VTE6 544 aaKnown RBP24.53■■□□□ 1.52
CLN3-209ENST00000561689 NOSTRINQ8IVI9 506 aa24.53■■□□□ 1.52
CLN3-209ENST00000561689 FOXP1Q9H334 677 aaPredicted RBP24.53■■□□□ 1.52
CLN3-209ENST00000561689 CLIC4Q9Y696 253 aa24.53■■□□□ 1.52
CLN3-209ENST00000561689 CCDC96Q2M329 555 aa24.52■■□□□ 1.52
CLN3-209ENST00000561689 HOMER1Q86YM7 354 aa24.52■■□□□ 1.52
CLN3-209ENST00000561689 RTEL1Q9NZ71 1219 aa24.52■■□□□ 1.52
CLN3-209ENST00000561689 RCOR1Q9UKL0 485 aa24.52■■□□□ 1.52
CLN3-209ENST00000561689 SBF1O95248 1867 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 HIRAP54198 1017 aaPredicted RBP24.51■■□□□ 1.51
CLN3-209ENST00000561689 MAP3K10Q02779 954 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 KCTD1Q719H9 257 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.51■■□□□ 1.51
CLN3-209ENST00000561689 ZBTB21Q9ULJ3 1066 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 ISY1Q9ULR0 285 aaKnown RBP24.51■■□□□ 1.51
CLN3-209ENST00000561689 SMARCA1P28370 1054 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 KRT2P35908 639 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 NLRP5P59047 1200 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 SLFN13Q68D06 897 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 TTBK2Q6IQ55 1244 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 HEATR3Q7Z4Q2 680 aa24.51■■□□□ 1.51
CLN3-209ENST00000561689 RRP36Q96EU6 259 aaKnown RBP24.51■■□□□ 1.51
CLN3-209ENST00000561689 DICER1Q9UPY3 1922 aaKnown RBP24.5■■□□□ 1.51
CLN3-209ENST00000561689 A0A1W2PRG0 241 aa24.5■■□□□ 1.51
CLN3-209ENST00000561689 NPY5RQ15761 445 aa24.5■■□□□ 1.51
CLN3-209ENST00000561689 GPR162Q16538 588 aa24.5■■□□□ 1.51
CLN3-209ENST00000561689 WWC2Q6AWC2 1192 aa24.5■■□□□ 1.51
CLN3-209ENST00000561689 PGBD1Q96JS3 809 aa24.5■■□□□ 1.51
CLN3-209ENST00000561689 PIGSQ96S52 555 aa24.5■■□□□ 1.51
CLN3-209ENST00000561689 GOLGA6L4A6NEF3 574 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 CAP2P40123 477 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 TYW1BQ6NUM6 668 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 RIOX1Q9H6W3 641 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 POLR3EQ9NVU0 708 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 TMEM63CQ9P1W3 806 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 F5H6K3 240 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 SLC16A2P36021 539 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 SLC1A4P43007 532 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 KLRC3Q07444 240 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 GPATCH4Q5T3I0 446 aaKnown RBP24.49■■□□□ 1.51
CLN3-209ENST00000561689 NBPF12Q5TAG4 269 aaPredicted RBP24.49■■□□□ 1.51
CLN3-209ENST00000561689 PRAMEF18Q5VWM3 479 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 ANO1Q5XXA6 986 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 GGA3Q9NZ52 723 aa24.49■■□□□ 1.51
CLN3-209ENST00000561689 MYH6P13533 1939 aa24.48■■□□□ 1.51
CLN3-209ENST00000561689 ECE1P42892 770 aa24.48■■□□□ 1.51
CLN3-209ENST00000561689 LINC00301Q8NCQ3 95 aa24.48■■□□□ 1.51
CLN3-209ENST00000561689 ACER1Q8TDN7 264 aa24.48■■□□□ 1.51
CLN3-209ENST00000561689 SEC63Q9UGP8 760 aaKnown RBP24.48■■□□□ 1.51
CLN3-209ENST00000561689 PHF20L1A8MW92 1017 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 ADAMTS3O15072 1205 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 STK38Q15208 465 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 APOBEC3FQ8IUX4 373 aaKnown RBP24.47■■□□□ 1.51
CLN3-209ENST00000561689 DCAF4Q8WV16 495 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 BRMS1Q9HCU9 246 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 SH3GLB2Q9NR46 395 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 BARHL2Q9NY43 387 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 STXBP3O00186 592 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 NDUFB10O96000 172 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 LMOD1P29536 600 aaPredicted RBP24.47■■□□□ 1.51
CLN3-209ENST00000561689 NASPP49321 788 aaPredicted RBP24.47■■□□□ 1.51
CLN3-209ENST00000561689 SF3A1Q15459 793 aaKnown RBP24.47■■□□□ 1.51
CLN3-209ENST00000561689 EARS2Q5JPH6 523 aaKnown RBP24.47■■□□□ 1.51
CLN3-209ENST00000561689 ADGRF4Q8IZF3 695 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 GMCL1P1Q8NEA9 526 aa24.47■■□□□ 1.51
CLN3-209ENST00000561689 NUP88Q99567 741 aaPredicted RBP24.47■■□□□ 1.51
CLN3-209ENST00000561689 FAM205CA6NFA0 338 aa24.46■■□□□ 1.51
CLN3-209ENST00000561689 ME1P48163 572 aa24.46■■□□□ 1.51
CLN3-209ENST00000561689 TOB1P50616 345 aaPredicted RBP24.46■■□□□ 1.51
CLN3-209ENST00000561689 ARHGEF10LQ9HCE6 1279 aa24.46■■□□□ 1.51
CLN3-209ENST00000561689 YEATS4O95619 227 aa24.45■■□□□ 1.51
CLN3-209ENST00000561689 ZSCAN23Q3MJ62 389 aa24.45■■□□□ 1.51
CLN3-209ENST00000561689 NOM1Q5C9Z4 860 aaKnown RBP24.45■■□□□ 1.51
CLN3-209ENST00000561689 SPICE1Q8N0Z3 855 aa24.45■■□□□ 1.51
CLN3-209ENST00000561689 JMJD4Q9H9V9 463 aa24.45■■□□□ 1.51
CLN3-209ENST00000561689 MYH4Q9Y623 1939 aa24.45■■□□□ 1.51
CLN3-209ENST00000561689 MYH15Q9Y2K3 1946 aa24.45■■□□□ 1.5
CLN3-209ENST00000561689 CCDC84Q86UT8 332 aaPredicted RBP24.45■■□□□ 1.5
CLN3-209ENST00000561689 TNFRSF25Q93038 417 aa24.45■■□□□ 1.5
CLN3-209ENST00000561689 USP17L10C9JJH3 530 aa24.44■■□□□ 1.5
CLN3-209ENST00000561689 ATP2B1P20020 1258 aa24.44■■□□□ 1.5
CLN3-209ENST00000561689 CALML3P27482 149 aa24.44■■□□□ 1.5
CLN3-209ENST00000561689 BICD2Q8TD16 824 aa24.44■■□□□ 1.5
CLN3-209ENST00000561689 ADARB2Q9NS39 739 aaKnown RBP24.44■■□□□ 1.5
CLN3-209ENST00000561689 SPTLC2O15270 562 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 ASNSP08243 561 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 LIG1P18858 919 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 NAPAP54920 295 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 RILPL1Q5EBL4 403 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 CCDC148Q8NFR7 591 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 KCNG4Q8TDN1 519 aa24.43■■□□□ 1.5
CLN3-209ENST00000561689 GMCL1Q96IK5 515 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms