RNA–Protein interactions for RNA: ENST00000561359.1

HERC1-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-213ENST00000561359 VPS37DQ86XT2 251 aa6.74□□□□□ -1.33
HERC1-213ENST00000561359 CCAR1Q8IX12 1150 aaKnown RBP6.74□□□□□ -1.33
HERC1-213ENST00000561359 TBC1D22AQ8WUA7 517 aa6.74□□□□□ -1.33
HERC1-213ENST00000561359 TRIM43Q96BQ3 446 aaPredicted RBP6.74□□□□□ -1.33
HERC1-213ENST00000561359 UIMC1Q96RL1 719 aa6.74□□□□□ -1.33
HERC1-213ENST00000561359 C11orf16Q9NQ32 467 aa6.74□□□□□ -1.33
HERC1-213ENST00000561359 PDLIM7Q9NR12 457 aa6.74□□□□□ -1.33
HERC1-213ENST00000561359 LRRFIP2Q9Y608 721 aaKnown RBP6.74□□□□□ -1.33
HERC1-213ENST00000561359 TCF20Q9UGU0 1960 aaKnown RBP6.74□□□□□ -1.33
HERC1-213ENST00000561359 CHD9Q3L8U1 2897 aa6.74□□□□□ -1.33
HERC1-213ENST00000561359 WDFY4Q6ZS81 3184 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 PI4KAP2A4QPH2 592 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 NEURL1BA8MQ27 555 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 PHF20L1A8MW92 1017 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 KBTBD13C9JR72 458 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 DNM1LO00429 736 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 ELL2O00472 640 aaPredicted RBP6.73□□□□□ -1.33
HERC1-213ENST00000561359 ZIC2O95409 532 aaPredicted RBP6.73□□□□□ -1.33
HERC1-213ENST00000561359 CSF1RP07333 972 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 TIMP2P16035 220 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 RGS2P41220 211 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 EPHB4P54760 987 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 NHLH1Q02575 133 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 PTK2Q05397 1052 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 PABPC4Q13310 644 aaKnown RBP eCLIP6.73□□□□□ -1.33
HERC1-213ENST00000561359 MFSD14CQ5VZR4 134 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 SLC39A5Q6ZMH5 540 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 CCDC84Q86UT8 332 aaPredicted RBP6.73□□□□□ -1.33
HERC1-213ENST00000561359 PI4KAP1Q8N8J0 262 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 EPS8L1Q8TE68 723 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 LPAR1Q92633 364 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 FAM84BQ96KN1 310 aaPredicted RBP6.73□□□□□ -1.33
HERC1-213ENST00000561359 MRIQ9BWK5 157 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 PLA2G12BQ9BX93 195 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 C1QTNF2Q9BXJ5 285 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 ASCC2Q9H1I8 757 aaPredicted RBP6.73□□□□□ -1.33
HERC1-213ENST00000561359 CNNM1Q9NRU3 951 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 DDX20Q9UHI6 824 aaKnown RBP6.73□□□□□ -1.33
HERC1-213ENST00000561359 CFAP54Q96N23 3096 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 MAST3O60307 1309 aa6.73□□□□□ -1.33
HERC1-213ENST00000561359 CHD7Q9P2D1 2997 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 MSCO60682 206 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 SNRPBP14678 240 aaKnown RBP6.72□□□□□ -1.33
HERC1-213ENST00000561359 RAG1P15918 1043 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 GRM5P41594 1212 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 IRX3P78415 501 aaPredicted RBP6.72□□□□□ -1.33
HERC1-213ENST00000561359 NFIAQ12857 509 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 UBE4AQ14139 1066 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 GJC2Q5T442 439 aaPredicted RBP6.72□□□□□ -1.33
HERC1-213ENST00000561359 HHIPL2Q6UWX4 724 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 KSR2Q6VAB6 950 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 LDHAL6AQ6ZMR3 332 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 ZSCAN29Q8IWY8 852 aaPredicted RBP6.72□□□□□ -1.33
HERC1-213ENST00000561359 ARRDC4Q8NCT1 418 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 APBA2Q99767 749 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 PBX4Q9BYU1 374 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 CWC22Q9HCG8 908 aaKnown RBP6.72□□□□□ -1.33
HERC1-213ENST00000561359 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.72□□□□□ -1.33
HERC1-213ENST00000561359 TACC3Q9Y6A5 838 aa6.72□□□□□ -1.33
HERC1-213ENST00000561359 REV3LO60673 3130 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 GRXCR1A8MXD5 290 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 PEX10O60683 326 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 CTNND1O60716 968 aaKnown RBP6.71□□□□□ -1.34
HERC1-213ENST00000561359 NR3C2P08235 984 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 PRKCSHP14314 528 aaPredicted RBP6.71□□□□□ -1.34
HERC1-213ENST00000561359 ITGB8P26012 769 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 MAPK4P31152 587 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 HMGCS2P54868 508 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 TLE2Q04725 743 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 FPGSQ05932 587 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 SPP2Q13103 211 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 GCKRQ14397 625 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 CDC42EP5Q6NZY7 148 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 TRIM46Q7Z4K8 759 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 GPRC5AQ8NFJ5 357 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 FERMT2Q96AC1 680 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 ITPKCQ96DU7 683 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 ZNF594Q96JF6 807 aaPredicted RBP6.71□□□□□ -1.34
HERC1-213ENST00000561359 MORF4L1Q9UBU8 362 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 MAP4K5Q9Y4K4 846 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 MYBBP1AQ9BQG0 1328 aaKnown RBP6.71□□□□□ -1.34
HERC1-213ENST00000561359 LTBP2Q14767 1821 aa6.71□□□□□ -1.34
HERC1-213ENST00000561359 MAST2Q6P0Q8 1798 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 PRR33A8MZF0 331 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 ERC2O15083 957 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 UPP2O95045 317 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 CLTBP09497 229 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 ADCYAP1R1P41586 468 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 FOXK2Q01167 660 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 CCDC57Q2TAC2 916 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 CAVIN4Q5BKX8 364 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 CCDC30Q5VVM6 783 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 MRPL14Q6P1L8 145 aaKnown RBP6.7□□□□□ -1.34
HERC1-213ENST00000561359 GPR142Q7Z601 462 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 PLEKHH3Q7Z736 793 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 ZFPM1Q8IX07 1006 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 CCDC116Q8IYX3 515 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 USP6NLQ92738 828 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 FBXL18Q96ME1 805 aa6.7□□□□□ -1.34
HERC1-213ENST00000561359 MYH16Q9H6N6 1097 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms