RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ZMYM5Q9UJ78 669 aa8.29□□□□□ -1.08
VPS13C-208ENST00000559119 PSPNO60542 156 aa8.28□□□□□ -1.08
VPS13C-208ENST00000559119 PEX10O60683 326 aa8.28□□□□□ -1.08
VPS13C-208ENST00000559119 EIF4A3P38919 411 aaKnown RBP8.28□□□□□ -1.08
VPS13C-208ENST00000559119 HDAC8Q9BY41 377 aa8.28□□□□□ -1.08
VPS13C-208ENST00000559119 LRRC3Q9BY71 257 aa8.28□□□□□ -1.08
VPS13C-208ENST00000559119 SEMA7AO75326 666 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 UBOX5O94941 541 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 PCBP3P57721 371 aaKnown RBP8.27□□□□□ -1.09
VPS13C-208ENST00000559119 DLG4P78352 724 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 WAPLQ7Z5K2 1190 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 USHBP1Q8N6Y0 703 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 DAGLBQ8NCG7 672 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 KRTAP4-9Q9BYQ8 210 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 FOXP3Q9BZS1 431 aa8.27□□□□□ -1.09
VPS13C-208ENST00000559119 ZNF552Q9H707 407 aaPredicted RBP8.27□□□□□ -1.09
VPS13C-208ENST00000559119 RAD51AP2Q09MP3 1159 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 SLC14A2Q15849 920 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 LILRA6Q6PI73 481 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 ZNF655Q8N720 491 aaPredicted RBP8.26□□□□□ -1.09
VPS13C-208ENST00000559119 TCTN2Q96GX1 697 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 IRF2BPLQ9H1B7 796 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 KCNQ5Q9NR82 932 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 TCFL5Q9UL49 500 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 ZNF281Q9Y2X9 895 aa8.26□□□□□ -1.09
VPS13C-208ENST00000559119 TEX51A0A1B0GUA7 166 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 MYOCOSA0A1B0GUC4 107 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 GREM1O60565 184 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 USP2O75604 605 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-208ENST00000559119 ATE1O95260 518 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 GALK1P51570 392 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 NBPF12Q5TAG4 269 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-208ENST00000559119 OVOS1Q6IE37 1185 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 TMC3Q7Z5M5 1100 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 SIRT2Q8IXJ6 389 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 ZNF296Q8WUU4 475 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-208ENST00000559119 SHISA4Q96DD7 197 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 G6PC3Q9BUM1 346 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 BCL11AQ9H165 835 aa8.25□□□□□ -1.09
VPS13C-208ENST00000559119 OR14I1A6ND48 311 aa8.24□□□□□ -1.09
VPS13C-208ENST00000559119 NBPF9Q3BBW0 867 aa8.24□□□□□ -1.09
VPS13C-208ENST00000559119 ADGRF1Q5T601 910 aa8.24□□□□□ -1.09
VPS13C-208ENST00000559119 TTLL10Q6ZVT0 673 aa8.24□□□□□ -1.09
VPS13C-208ENST00000559119 GZF1Q9H116 711 aaPredicted RBP8.24□□□□□ -1.09
VPS13C-208ENST00000559119 GGT7Q9UJ14 662 aa8.24□□□□□ -1.09
VPS13C-208ENST00000559119 FKTNO75072 461 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 CLEC3AO75596 197 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 POLR2BP30876 1174 aaKnown RBP8.23□□□□□ -1.09
VPS13C-208ENST00000559119 KIR2DL1P43626 348 aaPredicted RBP8.23□□□□□ -1.09
VPS13C-208ENST00000559119 KIR2DL2P43627 348 aaPredicted RBP8.23□□□□□ -1.09
VPS13C-208ENST00000559119 CDCP2Q5VXM1 449 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 CEP128Q6ZU80 1094 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 HS2ST1Q7LGA3 356 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 NLRX1Q86UT6 975 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 LINC00116Q8NCU8 138 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 MAP6Q96JE9 813 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 CNNM2Q9H8M5 875 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 EHMT1Q9H9B1 1298 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 RAPGEFL1Q9UHV5 662 aa8.23□□□□□ -1.09
VPS13C-208ENST00000559119 CNOT6Q9ULM6 557 aaKnown RBP8.23□□□□□ -1.09
VPS13C-208ENST00000559119 NRDCO43847 1150 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 SYPP08247 313 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 INHBBP09529 407 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 SNW1Q13573 536 aaKnown RBP8.22□□□□□ -1.09
VPS13C-208ENST00000559119 SEZ6Q53EL9 994 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 ZNF326Q5BKZ1 582 aaKnown RBP8.22□□□□□ -1.09
VPS13C-208ENST00000559119 GK5Q6ZS86 529 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 NLRC3Q7RTR2 1065 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 SGPP1Q9BX95 441 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 BCL2L13Q9BXK5 485 aa8.22□□□□□ -1.09
VPS13C-208ENST00000559119 NOTOA8MTQ0 251 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 PRAMEF1O95521 474 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 MCM4P33991 863 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 CCNFP41002 786 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 CRKP46108 304 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 APOBRQ0VD83 1088 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 ATG4CQ96DT6 458 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 ZNF512BQ96KM6 892 aaPredicted RBP8.21□□□□□ -1.1
VPS13C-208ENST00000559119 UBP1Q9NZI7 540 aa8.21□□□□□ -1.1
VPS13C-208ENST00000559119 TMEM82A0PJX8 343 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 KRTAP9-7A8MTY7 169 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 RFXAPO00287 272 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 SIGLEC6O43699 453 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 ZNF385BQ569K4 471 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 REXO1Q8N1G1 1221 aaKnown RBP8.2□□□□□ -1.1
VPS13C-208ENST00000559119 PRDM14Q9GZV8 571 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 CRTAC1Q9NQ79 661 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 ADAMTS1Q9UHI8 967 aa8.2□□□□□ -1.1
VPS13C-208ENST00000559119 ZNF165P49910 485 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 SRSF3P84103 164 aaKnown RBP8.19□□□□□ -1.1
VPS13C-208ENST00000559119 CLCQ05315 142 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 LRRFIP1Q32MZ4 808 aaKnown RBP8.19□□□□□ -1.1
VPS13C-208ENST00000559119 BBS9Q3SYG4 887 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 GIPC2Q8TF65 315 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 HHIPL1Q96JK4 782 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 MKRN2Q9H000 416 aaKnown RBP8.19□□□□□ -1.1
VPS13C-208ENST00000559119 GCM1Q9NP62 436 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 CHST7Q9NS84 486 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 SIRT5Q9NXA8 310 aa8.19□□□□□ -1.1
VPS13C-208ENST00000559119 KCTD3Q9Y597 815 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms