RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 USP17L17D6RBQ6 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 USP17L19D6RCP7 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 USP17L20D6RJB6 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 SLC3A2P08195 630 aaKnown RBP11.46□□□□□ -0.58
SPG11-214ENST00000558989 HSPD1P10809 573 aaKnown RBP11.46□□□□□ -0.58
SPG11-214ENST00000558989 HOXA7P31268 230 aaPredicted RBP11.46□□□□□ -0.58
SPG11-214ENST00000558989 PDE4BQ07343 736 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 USP17L24Q0WX57 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 SLC9C1Q4G0N8 1177 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.46□□□□□ -0.58
SPG11-214ENST00000558989 TACC3Q9Y6A5 838 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 RLFQ13129 1914 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 ROBO3Q96MS0 1386 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 ZNFX1Q9P2E3 1918 aaKnown RBP11.45□□□□□ -0.58
SPG11-214ENST00000558989 RANBP6O60518 1105 aaKnown RBP11.45□□□□□ -0.58
SPG11-214ENST00000558989 FGAP02671 866 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 NEFLP07196 543 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 TSPY3P0CV98 308 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 TSPY8P0CW00 308 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 GCLCP48506 637 aaPredicted RBP11.45□□□□□ -0.58
SPG11-214ENST00000558989 TFAP4Q01664 338 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 FAM110CQ1W6H9 321 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 Q3C1V9 767 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 CATSPERGQ6ZRH7 1159 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 CCAR1Q8IX12 1150 aaKnown RBP11.45□□□□□ -0.58
SPG11-214ENST00000558989 NUP88Q99567 741 aaPredicted RBP11.45□□□□□ -0.58
SPG11-214ENST00000558989 IL25Q9H293 177 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 KANSL2Q9H9L4 492 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 BIN2Q9UBW5 565 aaPredicted RBP11.45□□□□□ -0.58
SPG11-214ENST00000558989 CLIP2Q9UDT6 1046 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 SRRDQ9UH36 339 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 PLXNB2O15031 1838 aa11.45□□□□□ -0.58
SPG11-214ENST00000558989 GPR37O15354 613 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 NMT2O60551 498 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 HOXD10P28358 340 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 POTEEQ6S8J3 1075 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 LRRC47Q8N1G4 583 aaKnown RBP11.44□□□□□ -0.58
SPG11-214ENST00000558989 ZNF592Q92610 1267 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 CCDC136Q96JN2 1154 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 C12orf42Q96LP6 360 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 ZNF287Q9HBT7 754 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 RBPJLQ9UBG7 517 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 TMX2Q9Y320 296 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 TSPY2A6NKD2 308 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 FLOT1O75955 427 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 ELNP15502 786 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 FLT3LGP49771 235 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 PLS1Q14651 629 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 FAM83BQ5T0W9 1011 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 GPRC5AQ8NFJ5 357 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 COA7Q96BR5 231 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 CEP95Q96GE4 821 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 SH2D4AQ9H788 454 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 VCPKMTQ9H867 229 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 IVNS1ABPQ9Y6Y0 642 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 LAMA4Q16363 1823 aa11.44□□□□□ -0.58
SPG11-214ENST00000558989 HTTP42858 3142 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 SPDYE16A6NNV3 312 aaPredicted RBP11.43□□□□□ -0.58
SPG11-214ENST00000558989 HIP1O00291 1037 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 SLC4A3P48751 1232 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 ERVK-9P63128 1117 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 ERVK-24P63145 666 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 MFRPQ9BY79 579 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 PORCNQ9H237 461 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 FBXO28Q9NVF7 368 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 BTBD7Q9P203 1132 aa11.43□□□□□ -0.58
SPG11-214ENST00000558989 CNMDO75829 334 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 CENPQQ7L2Z9 268 aaPredicted RBP11.42□□□□□ -0.58
SPG11-214ENST00000558989 TICAM2Q86XR7 235 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 ATG4CQ96DT6 458 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 DRC1Q96MC2 740 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 STX8Q9UNK0 236 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.42□□□□□ -0.58
SPG11-214ENST00000558989 POTEFA5A3E0 1075 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 ADCY3O60266 1144 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 CLSTN1O94985 981 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 GNRH1P01148 92 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 CYP2B6P20813 491 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 GRK4P32298 578 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 MAP2K5Q13163 448 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 COG2Q14746 738 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 MTFR1Q15390 333 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 NBPF11Q86T75 865 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 TBC1D10CQ8IV04 446 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 MORF4L1Q9UBU8 362 aa11.42□□□□□ -0.58
SPG11-214ENST00000558989 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.42□□□□□ -0.58
SPG11-214ENST00000558989 SMCHD1A6NHR9 2005 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 F5H6K3 240 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 KLRC3Q07444 240 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 MFSD10Q14728 455 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 ALX1Q15699 326 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 RASGRP2Q7LDG7 609 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 NEDD1Q8NHV4 660 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 NKX2-3Q8TAU0 364 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 ZKSCAN3Q9BRR0 538 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 NBPF3Q9H094 633 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 MTMR4Q9NYA4 1195 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 NYAP2Q9P242 653 aa11.41□□□□□ -0.58
SPG11-214ENST00000558989 IGKV6D-41A0A0C4DH26 115 aa11.4□□□□□ -0.58
SPG11-214ENST00000558989 ZNF213O14771 459 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms