RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 TACC3Q9Y6A5 838 aa9.12□□□□□ -0.95
RTF1-204ENST00000558117 CLIP1P30622 1438 aa9.12□□□□□ -0.95
RTF1-204ENST00000558117 TMEM2Q9UHN6 1383 aa9.12□□□□□ -0.95
RTF1-204ENST00000558117 ERVK-7P63135 1459 aa9.11□□□□□ -0.95
RTF1-204ENST00000558117 RACK1P63244 317 aaKnown RBP9.11□□□□□ -0.95
RTF1-204ENST00000558117 USP48Q86UV5 1035 aa9.11□□□□□ -0.95
RTF1-204ENST00000558117 HID1Q8IV36 788 aa9.11□□□□□ -0.95
RTF1-204ENST00000558117 ZNF296Q8WUU4 475 aaPredicted RBP9.11□□□□□ -0.95
RTF1-204ENST00000558117 PRDM10Q9NQV6 1147 aa9.11□□□□□ -0.95
RTF1-204ENST00000558117 KCNQ5Q9NR82 932 aa9.11□□□□□ -0.95
RTF1-204ENST00000558117 CAMTA1Q9Y6Y1 1673 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 CAMSAP2Q08AD1 1489 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 ARHGAP35Q9NRY4 1499 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 MROH1Q8NDA8 1641 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 GREM1O60565 184 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 LRIG2O94898 1065 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 PGRP06401 933 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 ATF3P18847 181 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 ARMCX6Q7L4S7 300 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 C19orf44Q9H6X5 657 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 KIAA1107Q9UPP5 1409 aa9.1□□□□□ -0.95
RTF1-204ENST00000558117 RALGAPBQ86X10 1494 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 PTCH1Q13635 1447 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 TLR3O15455 904 aaKnown RBP9.09□□□□□ -0.95
RTF1-204ENST00000558117 LEFTY1O75610 366 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 MED26O95402 600 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 SPINK2P20155 84 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 FAM196AQ6ZSG2 479 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 PSMG3-AS1Q96PY0 264 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 FOXQ1Q9C009 403 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 FBRSQ9HAH7 460 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 DDX41Q9UJV9 622 aaKnown RBP9.09□□□□□ -0.95
RTF1-204ENST00000558117 ANGEL1Q9UNK9 670 aaKnown RBP9.09□□□□□ -0.95
RTF1-204ENST00000558117 ASXL1Q8IXJ9 1541 aa9.09□□□□□ -0.95
RTF1-204ENST00000558117 DTX1Q86Y01 620 aa9.08□□□□□ -0.96
RTF1-204ENST00000558117 DDX17Q92841 729 aaKnown RBP9.08□□□□□ -0.96
RTF1-204ENST00000558117 GTF2IRD1Q9UHL9 959 aa9.08□□□□□ -0.96
RTF1-204ENST00000558117 SUPT16HQ9Y5B9 1047 aaKnown RBP9.08□□□□□ -0.96
RTF1-204ENST00000558117 CORINQ9Y5Q5 1042 aa9.08□□□□□ -0.96
RTF1-204ENST00000558117 GPATCH8Q9UKJ3 1502 aaKnown RBP9.07□□□□□ -0.96
RTF1-204ENST00000558117 LOC100996750A0A140TA64 210 aa9.07□□□□□ -0.96
RTF1-204ENST00000558117 CRKP46108 304 aa9.07□□□□□ -0.96
RTF1-204ENST00000558117 MSMPQ1L6U9 139 aa9.07□□□□□ -0.96
RTF1-204ENST00000558117 NT5DC4Q86YG4 428 aa9.07□□□□□ -0.96
RTF1-204ENST00000558117 EAF1Q96JC9 268 aaPredicted RBP9.07□□□□□ -0.96
RTF1-204ENST00000558117 KRTAP4-6Q9BYQ5 205 aa9.07□□□□□ -0.96
RTF1-204ENST00000558117 UBP1Q9NZI7 540 aa9.07□□□□□ -0.96
RTF1-204ENST00000558117 PPP1R1BQ9UD71 204 aaPredicted RBP9.07□□□□□ -0.96
RTF1-204ENST00000558117 POLR3KQ9Y2Y1 108 aaPredicted RBP9.07□□□□□ -0.96
RTF1-204ENST00000558117 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.06□□□□□ -0.96
RTF1-204ENST00000558117 CAP2P40123 477 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 MPP2Q14168 576 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 SLBPQ14493 270 aaKnown RBP eCLIP9.06□□□□□ -0.96
RTF1-204ENST00000558117 NKG7Q16617 165 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 VSIG10LQ86VR7 867 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 MFSD2AQ8NA29 543 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 MIPEPQ99797 713 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 SPON2Q9BUD6 331 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 BSDC1Q9NW68 430 aaPredicted RBP9.06□□□□□ -0.96
RTF1-204ENST00000558117 ZC3H7BQ9UGR2 993 aaKnown RBP9.06□□□□□ -0.96
RTF1-204ENST00000558117 ADAM30Q9UKF2 790 aa9.06□□□□□ -0.96
RTF1-204ENST00000558117 SPHKAPQ2M3C7 1700 aa9.05□□□□□ -0.96
RTF1-204ENST00000558117 GLI3P10071 1580 aa9.05□□□□□ -0.96
RTF1-204ENST00000558117 GRIN3BO60391 1043 aa9.05□□□□□ -0.96
RTF1-204ENST00000558117 PLCG1P19174 1290 aa9.05□□□□□ -0.96
RTF1-204ENST00000558117 PRAMEF13Q5VWM6 474 aa9.05□□□□□ -0.96
RTF1-204ENST00000558117 FAM181AQ8N9Y4 354 aa9.05□□□□□ -0.96
RTF1-204ENST00000558117 SPON1Q9HCB6 807 aa9.05□□□□□ -0.96
RTF1-204ENST00000558117 TPX2Q9ULW0 747 aaKnown RBP9.05□□□□□ -0.96
RTF1-204ENST00000558117 E9PSI1 815 aa9.04□□□□□ -0.96
RTF1-204ENST00000558117 WNT11O96014 354 aa9.04□□□□□ -0.96
RTF1-204ENST00000558117 CWF19L2Q2TBE0 894 aaKnown RBP9.04□□□□□ -0.96
RTF1-204ENST00000558117 REC114Q7Z4M0 266 aa9.04□□□□□ -0.96
RTF1-204ENST00000558117 KIAA0825Q8IV33 1275 aa9.04□□□□□ -0.96
RTF1-204ENST00000558117 XAGE3Q8WTP9 111 aa9.04□□□□□ -0.96
RTF1-204ENST00000558117 TMEM87BQ96K49 555 aa9.04□□□□□ -0.96
RTF1-204ENST00000558117 PRDM5Q9NQX1 630 aaPredicted RBP9.04□□□□□ -0.96
RTF1-204ENST00000558117 TJP2Q9UDY2 1190 aa9.04□□□□□ -0.96
RTF1-204ENST00000558117 BRWD3Q6RI45 1802 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 CDC42BPAQ5VT25 1732 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 ROBO2Q9HCK4 1378 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 GNAT3A8MTJ3 354 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 KCNQ2O43526 872 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 CST3P01034 146 aaPredicted RBP9.03□□□□□ -0.96
RTF1-204ENST00000558117 CEACAM5P06731 702 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 HSPA6P17066 643 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 ITIH2P19823 946 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 RAD51AP2Q09MP3 1159 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 EZH2Q15910 746 aaKnown RBP9.03□□□□□ -0.96
RTF1-204ENST00000558117 XP32Q5T750 250 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 SLC6A19Q695T7 634 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 ZNF746Q6NUN9 644 aaPredicted RBP9.03□□□□□ -0.96
RTF1-204ENST00000558117 KRT27Q7Z3Y8 459 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 MRPL41Q8IXM3 137 aaKnown RBP9.03□□□□□ -0.96
RTF1-204ENST00000558117 ZNF654Q8IZM8 581 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 NETO1Q8TDF5 533 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 NT5C1AQ9BXI3 368 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 LRRC3Q9BY71 257 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 MKNK2Q9HBH9 465 aa9.03□□□□□ -0.96
RTF1-204ENST00000558117 BRMS1Q9HCU9 246 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms