RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 NACA2Q9H009 215 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 SENP3Q9H4L4 574 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-226ENST00000556825 SPATA31D1Q6ZQQ2 1576 aa15.37■□□□□ 0.05
SHMT2-226ENST00000556825 ARHGEF28Q8N1W1 1705 aaKnown RBP15.37■□□□□ 0.05
SHMT2-226ENST00000556825 C5orf60A6NFR6 353 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 IPO5O00410 1097 aaKnown RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 ELL2O00472 640 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 YY1P25490 414 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 SESN3P58005 492 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 NEXNQ0ZGT2 675 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 BTG3Q14201 252 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 ANKRD1Q15327 319 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 TAF11Q15544 211 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 GLE1Q53GS7 698 aaKnown RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 KCTD16Q68DU8 428 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 ANO7Q6IWH7 933 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 CACNA2D3Q8IZS8 1091 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 RUBCNQ92622 972 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 MMS19Q96T76 1030 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 MEIS3Q99687 375 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 DMAP1Q9NPF5 467 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 H3BQV1 296 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 ATP2C2O75185 946 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 GSTA1P08263 222 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 ME1P48163 572 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 APBA1Q02410 837 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 PKN1Q16512 942 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 IFFO2Q5TF58 517 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 APBB1IPQ7Z5R6 666 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 PNMA8AQ86V59 439 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 BRF1Q92994 677 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 TRAPPC9Q96Q05 1148 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 NDNQ99608 321 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 OCEL1Q9H607 264 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 TBC1D7Q9P0N9 293 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 SWAP70Q9UH65 585 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 CHD2O14647 1828 aaKnown RBP15.36■□□□□ 0.05
SHMT2-226ENST00000556825 NEDD4P46934 1319 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 SYNRGQ9UMZ2 1314 aa15.36■□□□□ 0.05
SHMT2-226ENST00000556825 A0A1W2PQ27 194 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 A0A1W2PQ64 194 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 A0A1W2PQD8 194 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 PALM3A6NDB9 673 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-226ENST00000556825 AKR1B15C9JRZ8 316 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-226ENST00000556825 A1BGP04217 495 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 TUBP50607 506 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 CKAP4Q07065 602 aaKnown RBP15.35■□□□□ 0.05
SHMT2-226ENST00000556825 BYSLQ13895 437 aaKnown RBP15.35■□□□□ 0.05
SHMT2-226ENST00000556825 POSTNQ15063 836 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 KIAA0753Q2KHM9 967 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 ERICH1Q86X53 443 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 LMNTD2Q8IXW0 634 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 ZBTB8BQ8NAP8 495 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-226ENST00000556825 SPIRE2Q8WWL2 714 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 KIFAP3Q92845 792 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 TULP4Q9NRJ4 1543 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 EVI5O60447 810 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 SLC7A5Q01650 507 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 C1orf131Q8NDD1 294 aaKnown RBP15.35■□□□□ 0.05
SHMT2-226ENST00000556825 DYDC1Q8WWB3 177 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 SYT15Q9BQS2 421 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 KCNMB3Q9NPA1 279 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.35■□□□□ 0.05
SHMT2-226ENST00000556825 ATP8A1Q9Y2Q0 1164 aa15.35■□□□□ 0.05
SHMT2-226ENST00000556825 FAM200BP0CF97 657 aa15.34■□□□□ 0.05
SHMT2-226ENST00000556825 ADALQ6DHV7 355 aa15.34■□□□□ 0.05
SHMT2-226ENST00000556825 SESTD1Q86VW0 696 aa15.34■□□□□ 0.05
SHMT2-226ENST00000556825 TSEN2Q8NCE0 465 aaKnown RBP15.34■□□□□ 0.05
SHMT2-226ENST00000556825 C8orf76Q96K31 380 aa15.34■□□□□ 0.05
SHMT2-226ENST00000556825 USP28Q96RU2 1077 aa15.34■□□□□ 0.05
SHMT2-226ENST00000556825 MTA3Q9BTC8 594 aa15.34■□□□□ 0.05
SHMT2-226ENST00000556825 FTOQ9C0B1 505 aaKnown RBP eCLIP15.34■□□□□ 0.05
SHMT2-226ENST00000556825 ALDH8A1Q9H2A2 487 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-226ENST00000556825 PPANQ9NQ55 473 aaKnown RBP15.34■□□□□ 0.05
SHMT2-226ENST00000556825 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.34■□□□□ 0.056e-6■■□□□ 12.1
SHMT2-226ENST00000556825 STAT6P42226 847 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 NDUFA8P51970 172 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 MAP3K12Q12852 859 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 CBX3Q13185 183 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 ZNF280DQ6N043 979 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 C16orf87Q6PH81 154 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 BICDL1Q6ZP65 573 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 FGD4Q96M96 766 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 ZIM3Q96PE6 472 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 PCDH18Q9HCL0 1135 aa15.33■□□□□ 0.05
SHMT2-226ENST00000556825 TMCC1O94876 653 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 CCDC166P0CW27 439 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 POLA2Q14181 598 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 IFI16Q16666 785 aaKnown RBP15.33■□□□□ 0.04
SHMT2-226ENST00000556825 CCDC70Q6NSX1 233 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 EMBQ6PCB8 327 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 SLF2Q8IX21 1173 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 IQCF2Q8IXL9 164 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 ATP11CQ8NB49 1132 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 PAIP2BQ9ULR5 123 aaKnown RBP15.33■□□□□ 0.04
SHMT2-226ENST00000556825 BARX2Q9UMQ3 279 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-226ENST00000556825 PCDHA7Q9UN72 937 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 SPG7Q9UQ90 795 aa15.33■□□□□ 0.04
SHMT2-226ENST00000556825 TRAPPC3O43617 180 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 RAB11FIP3O75154 756 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms