RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-222ENST00000556725 PLCD1P51178 756 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 USP14P54578 494 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 ABCB5Q2M3G0 1257 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 FAM47AQ5JRC9 791 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 KIAA1755Q5JYT7 1200 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 ATF7IPQ6VMQ6 1270 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 EFCAB3Q8N7B9 438 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 RNF25Q96BH1 459 aaPredicted RBP10.57□□□□□ -0.72
SYNE2-222ENST00000556725 RNPC3Q96LT9 517 aaKnown RBP10.57□□□□□ -0.72
SYNE2-222ENST00000556725 SERPINB13Q9UIV8 391 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 REV3LO60673 3130 aa10.57□□□□□ -0.72
SYNE2-222ENST00000556725 CHD9Q3L8U1 2897 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 RIOK3O14730 519 aaKnown RBP10.56□□□□□ -0.72
SYNE2-222ENST00000556725 STRNO43815 780 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 LSM11P83369 360 aaKnown RBP eCLIP10.56□□□□□ -0.72
SYNE2-222ENST00000556725 COG2Q14746 738 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 SEPT2Q15019 361 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 TNNI3KQ59H18 835 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 TJAP1Q5JTD0 557 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 CCDC158Q5M9N0 1113 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 C1orf53Q5VUE5 145 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 SPATC1LQ9H0A9 340 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 TACC3Q9Y6A5 838 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 FPGT-TNNI3KV9GXZ4 949 aa10.56□□□□□ -0.72
SYNE2-222ENST00000556725 TNFRSF10AO00220 468 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 GNAI2P04899 355 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 CLTBP09497 229 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 RARSP54136 660 aaKnown RBP10.55□□□□□ -0.72
SYNE2-222ENST00000556725 PLS1Q14651 629 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 PPM1EQ8WY54 764 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 MAML3Q96JK9 1138 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 EHD4Q9H223 541 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 CABP5Q9NP86 173 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 GPR108Q9NPR9 543 aa10.55□□□□□ -0.72
SYNE2-222ENST00000556725 TLR7Q9NYK1 1049 aaKnown RBP10.55□□□□□ -0.72
SYNE2-222ENST00000556725 ZNF236Q9UL36 1845 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 TMEM265A0A087WTH1 108 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 KIAA0355O15063 1070 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 PQBP1O60828 265 aaKnown RBP10.54□□□□□ -0.72
SYNE2-222ENST00000556725 IDH1O75874 414 aaKnown RBP10.54□□□□□ -0.72
SYNE2-222ENST00000556725 PGK1P00558 417 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 RAG1P15918 1043 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 TAL1P17542 331 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-222ENST00000556725 DNAJB2P25686 324 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 TTC6Q86TZ1 520 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 NCAPG2Q86XI2 1143 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 MAGEB6Q8N7X4 407 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 TTC28Q96AY4 2481 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 TANGO6Q9C0B7 1094 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 CCDC8Q9H0W5 538 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-222ENST00000556725 ZNF576Q9H609 170 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 ANTXR1Q9H6X2 564 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 HOXC10Q9NYD6 342 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 PHF24Q9UPV7 400 aa10.54□□□□□ -0.72
SYNE2-222ENST00000556725 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 A0A1W2PQ45 241 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 A0A1W2PQY0 241 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 ZNF316A6NFI3 1004 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 GRXCR1A8MXD5 290 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 MPHOSPH10O00566 681 aaKnown RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 BCAR3O75815 825 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 GABPAQ06546 454 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 FAAP100Q0VG06 881 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 SIAH1Q8IUQ4 282 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 SHCBP1Q8NEM2 672 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 ARHGAP45Q92619 1136 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 LENG1Q96BZ8 264 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 ATG4CQ96DT6 458 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 ZNF512BQ96KM6 892 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 XPNPEP3Q9NQH7 507 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 TMEM39AQ9NV64 488 aa10.53□□□□□ -0.72
SYNE2-222ENST00000556725 DBNLQ9UJU6 430 aaKnown RBP10.53□□□□□ -0.72
SYNE2-222ENST00000556725 CHD7Q9P2D1 2997 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 POLR3DP05423 398 aaPredicted RBP10.52□□□□□ -0.73
SYNE2-222ENST00000556725 PGK2P07205 417 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 CT47B1P0C2W7 299 aaPredicted RBP10.52□□□□□ -0.73
SYNE2-222ENST00000556725 RARBP10826 455 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 TRIM27P14373 513 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 PBX2P40425 430 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 FPGSQ05932 587 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 ARSIQ5FYB1 569 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 C16orf59Q7L2K0 433 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 CLEC10AQ8IUN9 316 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 ABRAQ8N0Z2 381 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 SPICE1Q8N0Z3 855 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 CLUAP1Q96AJ1 413 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.52□□□□□ -0.73
SYNE2-222ENST00000556725 MROH8Q9H579 483 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 SLC5A4Q9NY91 659 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 PLXNA1Q9UIW2 1896 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 A0A0G2JMZ2 1700 aa10.52□□□□□ -0.73
SYNE2-222ENST00000556725 COL11A1P12107 1806 aaPredicted RBP10.51□□□□□ -0.73
SYNE2-222ENST00000556725 SURF6O75683 361 aaKnown RBP10.51□□□□□ -0.73
SYNE2-222ENST00000556725 FLOT1O75955 427 aa10.51□□□□□ -0.73
SYNE2-222ENST00000556725 ZNF865P0CJ78 1059 aaPredicted RBP10.51□□□□□ -0.73
SYNE2-222ENST00000556725 CYP2D6P10635 497 aa10.51□□□□□ -0.73
SYNE2-222ENST00000556725 FCER1AP12319 257 aa10.51□□□□□ -0.73
SYNE2-222ENST00000556725 OS9Q13438 667 aaPredicted RBP10.51□□□□□ -0.73
SYNE2-222ENST00000556725 TMEM132BQ14DG7 1078 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms