RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 AOC3Q16853 763 aa6.42□□□□□ -1.38
ATXN3-239ENST00000556315 IGF2-ASQ6U949 168 aa6.42□□□□□ -1.38
ATXN3-239ENST00000556315 CTU1Q7Z7A3 348 aaKnown RBP6.42□□□□□ -1.38
ATXN3-239ENST00000556315 WFDC8Q8IUA0 241 aa6.42□□□□□ -1.38
ATXN3-239ENST00000556315 RTFDC1Q9BY42 306 aaPredicted RBP6.42□□□□□ -1.38
ATXN3-239ENST00000556315 GBA2Q9HCG7 927 aaPredicted RBP6.42□□□□□ -1.38
ATXN3-239ENST00000556315 CNOT7Q9UIV1 285 aaKnown RBP6.42□□□□□ -1.38
ATXN3-239ENST00000556315 CDHR2Q9BYE9 1310 aa6.42□□□□□ -1.38
ATXN3-239ENST00000556315 CEMIPQ8WUJ3 1361 aa6.42□□□□□ -1.38
ATXN3-239ENST00000556315 SNED1Q8TER0 1413 aa6.42□□□□□ -1.38
ATXN3-239ENST00000556315 DICER1Q9UPY3 1922 aaKnown RBP6.41□□□□□ -1.38
ATXN3-239ENST00000556315 KRTAP9-6A0A140TA67 174 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 DEAF1O75398 565 aaPredicted RBP6.41□□□□□ -1.38
ATXN3-239ENST00000556315 HSPA5P11021 654 aaKnown RBP6.41□□□□□ -1.38
ATXN3-239ENST00000556315 NOS3P29474 1203 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 ZNF157P51786 506 aaPredicted RBP6.41□□□□□ -1.38
ATXN3-239ENST00000556315 SLC10A5Q5PT55 438 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 SUSD4Q5VX71 490 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 C16orf46Q6P387 395 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 SP8Q8IXZ3 490 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 RTF1Q92541 710 aaKnown RBP6.41□□□□□ -1.38
ATXN3-239ENST00000556315 DPF2Q92785 391 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 PHACTR3Q96KR7 559 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 CSRNP1Q96S65 589 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 TLR7Q9NYK1 1049 aaKnown RBP6.41□□□□□ -1.38
ATXN3-239ENST00000556315 IVNS1ABPQ9Y6Y0 642 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 CCDC88AQ3V6T2 1871 aa6.41□□□□□ -1.38
ATXN3-239ENST00000556315 DLL1O00548 723 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 HTATSF1O43719 755 aaKnown RBP6.4□□□□□ -1.38
ATXN3-239ENST00000556315 RAD17O75943 681 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 HOXD8P13378 290 aaPredicted RBP6.4□□□□□ -1.38
ATXN3-239ENST00000556315 IREB2P48200 963 aaKnown RBP6.4□□□□□ -1.38
ATXN3-239ENST00000556315 KIAA2012Q0VF49 1180 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 TAF7Q15545 349 aaPredicted RBP6.4□□□□□ -1.38
ATXN3-239ENST00000556315 DPP8Q6V1X1 898 aaPredicted RBP6.4□□□□□ -1.38
ATXN3-239ENST00000556315 KIF6Q6ZMV9 814 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 KRT26Q7Z3Y9 468 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 PPP1R42Q7Z4L9 355 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 ZNF34Q8IZ26 560 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 NGEFQ8N5V2 710 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 DCPSQ96C86 337 aaKnown RBP6.4□□□□□ -1.38
ATXN3-239ENST00000556315 SMG9Q9H0W8 520 aaKnown RBP6.4□□□□□ -1.38
ATXN3-239ENST00000556315 EGFL7Q9UHF1 273 aa6.4□□□□□ -1.38
ATXN3-239ENST00000556315 ANKRD31Q8N7Z5 1873 aa6.4□□□□□ -1.39
ATXN3-239ENST00000556315 HYAL3O43820 417 aaPredicted RBP6.39□□□□□ -1.39
ATXN3-239ENST00000556315 GPTP24298 496 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 PRKAR2BP31323 418 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 NAA30Q147X3 362 aaPredicted RBP6.39□□□□□ -1.39
ATXN3-239ENST00000556315 PARP10Q53GL7 1025 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 CC2D1BQ5T0F9 858 aaKnown RBP6.39□□□□□ -1.39
ATXN3-239ENST00000556315 DLK2Q6UY11 383 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 TREML1Q86YW5 311 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 HELQQ8TDG4 1101 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 GTF3C2Q8WUA4 911 aaPredicted RBP6.39□□□□□ -1.39
ATXN3-239ENST00000556315 MEGF10Q96KG7 1140 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 SEPT3Q9UH03 358 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 HDAC9Q9UKV0 1011 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 USP20Q9Y2K6 914 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 RRP7AQ9Y3A4 280 aaKnown RBP6.39□□□□□ -1.39
ATXN3-239ENST00000556315 KCNMB2Q9Y691 235 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 MAP3K15Q6ZN16 1313 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 ABCC12Q96J65 1359 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 THSD7BQ9C0I4 1608 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 COL11A2P13942 1736 aaPredicted RBP6.39□□□□□ -1.39
ATXN3-239ENST00000556315 SCN11AQ9UI33 1791 aa6.39□□□□□ -1.39
ATXN3-239ENST00000556315 XYLBO75191 536 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 NTSR2O95665 410 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 ABL1P00519 1130 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 RPS12P25398 132 aaKnown RBP6.38□□□□□ -1.39
ATXN3-239ENST00000556315 SCNN1AP37088 669 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 HABP4Q5JVS0 413 aaKnown RBP6.38□□□□□ -1.39
ATXN3-239ENST00000556315 COX20Q5RI15 118 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 CAPN12Q6ZSI9 719 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 TTLL7Q6ZT98 887 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 HFE2Q6ZVN8 426 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 MCM10Q7L590 875 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 NBPF11Q86T75 865 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 SLC51AQ86UW1 340 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 PNISRQ8TF01 805 aaKnown RBP6.38□□□□□ -1.39
ATXN3-239ENST00000556315 UTP14AQ9BVJ6 771 aaKnown RBP6.38□□□□□ -1.39
ATXN3-239ENST00000556315 NUDCQ9Y266 331 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 IBTKQ9P2D0 1353 aaPredicted RBP6.38□□□□□ -1.39
ATXN3-239ENST00000556315 COL4A5P29400 1685 aa6.38□□□□□ -1.39
ATXN3-239ENST00000556315 RIC1Q4ADV7 1423 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 ABCC4O15439 1325 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 UBN2Q6ZU65 1347 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 SHTN1A0MZ66 631 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 YDJCA8MPS7 323 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 PSMD14O00487 310 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 MMP20O60882 483 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 EIF2AK2P19525 551 aaKnown RBP6.37□□□□□ -1.39
ATXN3-239ENST00000556315 BRD2P25440 801 aaKnown RBP6.37□□□□□ -1.39
ATXN3-239ENST00000556315 SOX18P35713 384 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 SERPINB4P48594 390 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 FKBP1BP68106 108 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 TBC1D10BQ4KMP7 808 aaPredicted RBP6.37□□□□□ -1.39
ATXN3-239ENST00000556315 NOM1Q5C9Z4 860 aaKnown RBP6.37□□□□□ -1.39
ATXN3-239ENST00000556315 DDX46Q7L014 1031 aaKnown RBP6.37□□□□□ -1.39
ATXN3-239ENST00000556315 TMC4Q7Z404 712 aa6.37□□□□□ -1.39
ATXN3-239ENST00000556315 DZIP1LQ8IYY4 767 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms