RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 MOB2Q70IA6 237 aa12.83□□□□□ -0.36
TMEM260-208ENST00000555905 CCDC84Q86UT8 332 aaPredicted RBP12.83□□□□□ -0.36
TMEM260-208ENST00000555905 GMCL1Q96IK5 515 aa12.83□□□□□ -0.36
TMEM260-208ENST00000555905 KIAA1683Q9H0B3 1180 aa12.83□□□□□ -0.36
TMEM260-208ENST00000555905 VCPKMTQ9H867 229 aa12.83□□□□□ -0.36
TMEM260-208ENST00000555905 CWC22Q9HCG8 908 aaKnown RBP12.83□□□□□ -0.36
TMEM260-208ENST00000555905 FAM217BQ9NTX9 383 aaPredicted RBP12.83□□□□□ -0.36
TMEM260-208ENST00000555905 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.83□□□□□ -0.36
TMEM260-208ENST00000555905 ISY1Q9ULR0 285 aaKnown RBP12.83□□□□□ -0.36
TMEM260-208ENST00000555905 KIF3AQ9Y496 699 aa12.83□□□□□ -0.36
TMEM260-208ENST00000555905 PTPDC1A2A3K4 754 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 PALM3A6NDB9 673 aaPredicted RBP12.82□□□□□ -0.36
TMEM260-208ENST00000555905 TRIM75PA6NK02 468 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 USP17L10C9JJH3 530 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 TOMM70O94826 608 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 NDUFB10O96000 172 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 SNHG28P0DPA3 235 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 SLC1A4P43007 532 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 SSRP1Q08945 709 aaKnown RBP12.82□□□□□ -0.36
TMEM260-208ENST00000555905 ZNF543Q08ER8 600 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 SPP2Q13103 211 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 ZYXQ15942 572 aaKnown RBP12.82□□□□□ -0.36
TMEM260-208ENST00000555905 GPATCH4Q5T3I0 446 aaKnown RBP12.82□□□□□ -0.36
TMEM260-208ENST00000555905 LDLRAD1Q5T700 205 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 USP17L2Q6R6M4 530 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 TMTC3Q6ZXV5 915 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 ERO1BQ86YB8 467 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 TRIM22Q8IYM9 498 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 NSUN7Q8NE18 718 aaKnown RBP12.82□□□□□ -0.36
TMEM260-208ENST00000555905 RBM46Q8TBY0 533 aaKnown RBP12.82□□□□□ -0.36
TMEM260-208ENST00000555905 LPAR1Q92633 364 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 SLC10A4Q96EP9 437 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 CLMNQ96JQ2 1002 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 ELP3Q9H9T3 547 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 MAD2L2Q9UI95 211 aa12.82□□□□□ -0.36
TMEM260-208ENST00000555905 C19orf67A6NJJ6 358 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 C19orf81C9J6K1 198 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 KLRF2D3W0D1 207 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 PLEKHA8P1O95397 391 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 CTDNEP1O95476 244 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 GOLGA8HP0CJ92 632 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 BMP3P12645 472 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 IFNAR1P17181 557 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 GJB2P29033 226 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 BACE1P56817 501 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 AKAP17AQ02040 695 aaKnown RBP12.81□□□□□ -0.36
TMEM260-208ENST00000555905 PPATQ06203 517 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 MTMR2Q13614 643 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 NTRK3Q16288 839 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 SPICE1Q8N0Z3 855 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 STAG2Q8N3U4 1231 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 FAM184AQ8NB25 1140 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 SMARCC2Q8TAQ2 1214 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 DDX11Q96FC9 970 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 SLC26A6Q9BXS9 759 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 GPCPD1Q9NPB8 672 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 AFG3L2Q9Y4W6 797 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 MYH6P13533 1939 aa12.81□□□□□ -0.36
TMEM260-208ENST00000555905 FRMPD2Q68DX3 1309 aaPredicted RBP12.81□□□□□ -0.36
TMEM260-208ENST00000555905 SPDYE5A6NIY4 337 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 JAK2O60674 1132 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 FMNL1O95466 1100 aaPredicted RBP12.8□□□□□ -0.36
TMEM260-208ENST00000555905 SMARCA1P28370 1054 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 PPIL2Q13356 520 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 CST9Q5W186 159 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 KCTD1Q719H9 257 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 RASGRP2Q7LDG7 609 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 CMTR1Q8N1G2 835 aaKnown RBP12.8□□□□□ -0.36
TMEM260-208ENST00000555905 PLCD3Q8N3E9 789 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 CCDC82Q8N4S0 544 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 SRBD1Q8N5C6 995 aaKnown RBP12.8□□□□□ -0.36
TMEM260-208ENST00000555905 ZNF784Q8NCA9 323 aaPredicted RBP12.8□□□□□ -0.36
TMEM260-208ENST00000555905 WASF1Q92558 559 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 OTUD5Q96G74 571 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 TMOD4Q9NZQ9 345 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 RBM27Q9P2N5 1060 aaKnown RBP12.8□□□□□ -0.36
TMEM260-208ENST00000555905 ORC3Q9UBD5 711 aaPredicted RBP12.8□□□□□ -0.36
TMEM260-208ENST00000555905 STK36Q9NRP7 1315 aa12.8□□□□□ -0.36
TMEM260-208ENST00000555905 CXCL11O14625 94 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 WDR46O15213 610 aaKnown RBP12.79□□□□□ -0.36
TMEM260-208ENST00000555905 PDCP20941 246 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 FSTL1Q12841 308 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 IKQ13123 557 aaPredicted RBP12.79□□□□□ -0.36
TMEM260-208ENST00000555905 FAM83BQ5T0W9 1011 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 NBPF11Q86T75 865 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 PHKBQ93100 1093 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 OPTNQ96CV9 577 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 NUP88Q99567 741 aaPredicted RBP12.79□□□□□ -0.36
TMEM260-208ENST00000555905 SPZ1Q9BXG8 430 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 RNF26Q9BY78 433 aaPredicted RBP12.79□□□□□ -0.36
TMEM260-208ENST00000555905 PASKQ96RG2 1323 aa12.79□□□□□ -0.36
TMEM260-208ENST00000555905 TMEM232C9JQI7 657 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 PRPF3O43395 683 aaKnown RBP12.78□□□□□ -0.36
TMEM260-208ENST00000555905 PPFIA3O75145 1194 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 DEXIO95424 95 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 STAT2P52630 851 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 HMGCS2P54868 508 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 HUNKP57058 714 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 FUT2Q10981 343 aa12.78□□□□□ -0.36
TMEM260-208ENST00000555905 KIAA1755Q5JYT7 1200 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms