RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 PTPDC1A2A3K4 754 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 LARGE1O95461 756 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 NDUFB10O96000 172 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 BMP3P12645 472 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 BACE1P56817 501 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 HUNKP57058 714 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 ZNF543Q08ER8 600 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 SPP2Q13103 211 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 COL9A3Q14050 684 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-220ENST00000555634 RRP1BQ14684 758 aaKnown RBP12.99□□□□□ -0.33
SHMT2-220ENST00000555634 TMTC3Q6ZXV5 915 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 FAM160B2Q86V87 743 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 CHURC1Q8WUH1 139 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 OPTNQ96CV9 577 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 RRP36Q96EU6 259 aaKnown RBP12.99□□□□□ -0.33
SHMT2-220ENST00000555634 RNF26Q9BY78 433 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-220ENST00000555634 SENP2Q9HC62 589 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 NCOA5Q9HCD5 579 aaKnown RBP12.99□□□□□ -0.33
SHMT2-220ENST00000555634 FZD1Q9UP38 647 aa12.99□□□□□ -0.33
SHMT2-220ENST00000555634 FRMPD2Q68DX3 1309 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-220ENST00000555634 KLRF2D3W0D1 207 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 UBE2Q2LH0YL09 131 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 ZBTB48P10074 688 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-220ENST00000555634 ECE1P42892 770 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 SNAPC2Q13487 334 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 SHROOM1Q2M3G4 852 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-220ENST00000555634 FASTKD5Q7L8L6 764 aaKnown RBP12.98□□□□□ -0.33
SHMT2-220ENST00000555634 SPICE1Q8N0Z3 855 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 NKX2-3Q8TAU0 364 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 CCDC12Q8WUD4 166 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-220ENST00000555634 SPZ1Q9BXG8 430 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 SLC26A6Q9BXS9 759 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 FEM1BQ9UK73 627 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 HPS5Q9UPZ3 1129 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 A0A0G2JMZ2 1700 aa12.98□□□□□ -0.33
SHMT2-220ENST00000555634 PASKQ96RG2 1323 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 TMEM88BA6NKF7 163 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 H3BQV1 296 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 hCG_1984214I3L0E3 225 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 CXCL11O14625 94 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 DEXIO95424 95 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 ITGBL1O95965 494 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-220ENST00000555634 SNHG28P0DPA3 235 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 IFNAR1P17181 557 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 SMARCA1P28370 1054 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 GJB2P29033 226 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 GTF2A2P52657 109 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 HMGCS2P54868 508 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 LDLRAD1Q5T700 205 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 DLK2Q6UY11 383 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 PAXIP1Q6ZW49 1069 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-220ENST00000555634 ZNF713Q8N859 430 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-220ENST00000555634 SPRYD3Q8NCJ5 442 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 PROCA1Q8NCQ7 364 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-220ENST00000555634 NSUN7Q8NE18 718 aaKnown RBP12.97□□□□□ -0.33
SHMT2-220ENST00000555634 ACER1Q8TDN7 264 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 GPCPD1Q9NPB8 672 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 FOXD4L1Q9NU39 408 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-220ENST00000555634 ORC3Q9UBD5 711 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-220ENST00000555634 PNMA3Q9UL41 463 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 PNMA2Q9UL42 364 aa12.97□□□□□ -0.33
SHMT2-220ENST00000555634 CNTNAP5Q8WYK1 1306 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 PALM3A6NDB9 673 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-220ENST00000555634 FMNL1O95466 1100 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-220ENST00000555634 CETPP11597 493 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 VCAM1P19320 739 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 IRX3P78415 501 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-220ENST00000555634 JAG1P78504 1218 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 GNL2Q13823 731 aaKnown RBP12.96□□□□□ -0.33
SHMT2-220ENST00000555634 FAM83BQ5T0W9 1011 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 GADL1Q6ZQY3 521 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 MOB2Q70IA6 237 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 KCTD1Q719H9 257 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 CCDC84Q86UT8 332 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-220ENST00000555634 CCDC148Q8NFR7 591 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 CLMNQ96JQ2 1002 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 C12orf42Q96LP6 360 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 BRMS1Q9HCU9 246 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 MAD2L2Q9UI95 211 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 AFG3L2Q9Y4W6 797 aa12.96□□□□□ -0.33
SHMT2-220ENST00000555634 A0A1W2PRG0 241 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 TMEM232C9JQI7 657 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 FLOT1O75955 427 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 PLEKHA8P1O95397 391 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 GOLGA8HP0CJ92 632 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 FDX1P10109 184 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 CDC27P30260 824 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 ADD1P35611 737 aaKnown RBP12.95□□□□□ -0.34
SHMT2-220ENST00000555634 ZNF157P51786 506 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-220ENST00000555634 SAFBQ15424 915 aaKnown RBP eCLIP12.95□□□□□ -0.34
SHMT2-220ENST00000555634 SYDE2Q5VT97 1194 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 HOMER1Q86YM7 354 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 FAM177A1Q8N128 213 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-220ENST00000555634 CCDC82Q8N4S0 544 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 DDX11Q96FC9 970 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 WNK4Q96J92 1243 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 SLF1Q9BQI6 1058 aa12.95□□□□□ -0.34
SHMT2-220ENST00000555634 RPAP3Q9H6T3 665 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-220ENST00000555634 BAZ2BQ9UIF8 2168 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms