RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 EPB41L4AQ9HCS5 686 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-216ENST00000555550 RTEL1Q9NZ71 1219 aa7.01□□□□□ -1.29
SCFD1-216ENST00000555550 FAM221AA4D161 298 aa7□□□□□ -1.29
SCFD1-216ENST00000555550 BPNT1O95861 308 aa7□□□□□ -1.29
SCFD1-216ENST00000555550 VIPR1P32241 457 aa7□□□□□ -1.29
SCFD1-216ENST00000555550 ASPNQ9BXN1 380 aa7□□□□□ -1.29
SCFD1-216ENST00000555550 FOXP3Q9BZS1 431 aa7□□□□□ -1.29
SCFD1-216ENST00000555550 DNAJA2O60884 412 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 F13A1P00488 732 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 RLBP1P12271 317 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 KRTAP10-2P60368 255 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 ZPBP2Q6X784 338 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 DBX2Q6ZNG2 339 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 CEP128Q6ZU80 1094 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 PRRT2Q7Z6L0 340 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-216ENST00000555550 GGNQ86UU5 652 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 PHACTR4Q8IZ21 702 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 SYT8Q8NBV8 401 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 CXorf38Q8TB03 319 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 VWCEQ96DN2 955 aa6.99□□□□□ -1.29
SCFD1-216ENST00000555550 N4BP3O15049 544 aa6.98□□□□□ -1.29
SCFD1-216ENST00000555550 PF4P02776 101 aa6.98□□□□□ -1.29
SCFD1-216ENST00000555550 GBP1P32455 592 aa6.98□□□□□ -1.29
SCFD1-216ENST00000555550 NMIQ13287 307 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-216ENST00000555550 CAMK2GQ13555 558 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-216ENST00000555550 KIR3DS1Q14943 382 aa6.98□□□□□ -1.29
SCFD1-216ENST00000555550 TAF1CQ15572 869 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-216ENST00000555550 RNF111Q6ZNA4 994 aa6.98□□□□□ -1.29
SCFD1-216ENST00000555550 GATAD2BQ8WXI9 593 aa6.98□□□□□ -1.29
SCFD1-216ENST00000555550 ASCC2Q9H1I8 757 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-216ENST00000555550 POLR3KQ9Y2Y1 108 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-216ENST00000555550 SLC22A31A6NKX4 558 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 NRDCO43847 1150 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 FKTNO75072 461 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 DIEXFQ68CQ4 756 aaKnown RBP6.97□□□□□ -1.29
SCFD1-216ENST00000555550 CCDC84Q86UT8 332 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-216ENST00000555550 TCTN2Q96GX1 697 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 MAP6Q96JE9 813 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 HHIPL1Q96JK4 782 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 PLCD4Q9BRC7 762 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 NOC4LQ9BVI4 516 aaKnown RBP6.97□□□□□ -1.29
SCFD1-216ENST00000555550 HDAC8Q9BY41 377 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 KRTAP17-1Q9BYP8 105 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 PRR36Q9H6K5 1346 aa6.97□□□□□ -1.29
SCFD1-216ENST00000555550 SSU72P8A0A1W2PR75 194 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 TMEM82A0PJX8 343 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 HTR3BO95264 441 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 CELA3BP08861 270 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 CDR1P51861 262 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 CHMP4BP1P59074 171 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 SND1Q7KZF4 910 aaKnown RBP eCLIP6.96□□□□□ -1.3
SCFD1-216ENST00000555550 TMC3Q7Z5M5 1100 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 TMEFF1Q8IYR6 380 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 ENOX1Q8TC92 643 aaKnown RBP6.96□□□□□ -1.3
SCFD1-216ENST00000555550 SYTL5Q8TDW5 730 aaPredicted RBP6.96□□□□□ -1.3
SCFD1-216ENST00000555550 CRTAC1Q9NQ79 661 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 TCFL5Q9UL49 500 aa6.96□□□□□ -1.3
SCFD1-216ENST00000555550 PNLIPP16233 465 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 KIR2DL1P43626 348 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-216ENST00000555550 KIR2DL2P43627 348 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-216ENST00000555550 RTP1P59025 263 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 YBX1P67809 324 aaKnown RBP6.95□□□□□ -1.3
SCFD1-216ENST00000555550 NFKB2Q00653 900 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 LMNB2Q03252 620 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 CNKSR3Q6P9H4 555 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 DAGLBQ8NCG7 672 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 ADAM7Q9H2U9 754 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 PARP2Q9UGN5 583 aa6.95□□□□□ -1.3
SCFD1-216ENST00000555550 HRKO00198 91 aa6.94□□□□□ -1.3
SCFD1-216ENST00000555550 SYPP08247 313 aa6.94□□□□□ -1.3
SCFD1-216ENST00000555550 CTSHP09668 335 aa6.94□□□□□ -1.3
SCFD1-216ENST00000555550 PCBP3P57721 371 aaKnown RBP6.94□□□□□ -1.3
SCFD1-216ENST00000555550 SNW1Q13573 536 aaKnown RBP6.94□□□□□ -1.3
SCFD1-216ENST00000555550 EAPPQ56P03 285 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-216ENST00000555550 FBXO27Q8NI29 283 aa6.94□□□□□ -1.3
SCFD1-216ENST00000555550 MZB1Q8WU39 189 aa6.94□□□□□ -1.3
SCFD1-216ENST00000555550 MINPP1Q9UNW1 487 aa6.94□□□□□ -1.3
SCFD1-216ENST00000555550 USP31Q70CQ4 1352 aa6.94□□□□□ -1.3
SCFD1-216ENST00000555550 IRS4O14654 1257 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-216ENST00000555550 GBP2P32456 591 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-216ENST00000555550 FAM160A1Q05DH4 1040 aa6.93□□□□□ -1.3
SCFD1-216ENST00000555550 FAM129CQ86XR2 697 aa6.93□□□□□ -1.3
SCFD1-216ENST00000555550 ZNF655Q8N720 491 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-216ENST00000555550 FAM161BQ96MY7 647 aa6.93□□□□□ -1.3
SCFD1-216ENST00000555550 KLHL14Q9P2G3 628 aa6.93□□□□□ -1.3
SCFD1-216ENST00000555550 MINDY4BA8MYZ0 360 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 RGS13O14921 159 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 UBOX5O94941 541 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 ST13P50502 369 aaKnown RBP6.92□□□□□ -1.3
SCFD1-216ENST00000555550 NCKAP1LP55160 1127 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 PSMD2Q13200 908 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 ARSHQ5FYA8 562 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 LDHDQ86WU2 507 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 IGDCC3Q8IVU1 814 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 LINC00116Q8NCU8 138 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 PWWP2AQ96N64 755 aa6.92□□□□□ -1.3
SCFD1-216ENST00000555550 ANKRD33BA6NCL7 494 aa6.91□□□□□ -1.3
SCFD1-216ENST00000555550 MPOP05164 745 aa6.91□□□□□ -1.3
SCFD1-216ENST00000555550 ERVFRD-1P60508 538 aa6.91□□□□□ -1.3
SCFD1-216ENST00000555550 NBPF9Q3BBW0 867 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms