RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 CALD1Q05682 793 aaKnown RBP8.13□□□□□ -1.11
LINC00643-203ENST00000555518 EXOSC9Q06265 439 aaKnown RBP8.13□□□□□ -1.11
LINC00643-203ENST00000555518 SOX4Q06945 474 aaPredicted RBP8.13□□□□□ -1.11
LINC00643-203ENST00000555518 FBLIM1Q8WUP2 373 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 RAPGEF4Q8WZA2 1011 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 HHIPQ96QV1 700 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 LGR6Q9HBX8 967 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 SEPT3Q9UH03 358 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 SPATA31A1Q5TZJ5 1347 aa8.12□□□□□ -1.11
LINC00643-203ENST00000555518 RNMTO43148 476 aaKnown RBP8.12□□□□□ -1.11
LINC00643-203ENST00000555518 CT47B1P0C2W7 299 aaPredicted RBP8.12□□□□□ -1.11
LINC00643-203ENST00000555518 ESRRAP11474 423 aaPredicted RBP8.12□□□□□ -1.11
LINC00643-203ENST00000555518 IL2RBP14784 551 aa8.12□□□□□ -1.11
LINC00643-203ENST00000555518 RARSP54136 660 aaKnown RBP8.12□□□□□ -1.11
LINC00643-203ENST00000555518 TSPYL6Q8N831 410 aa8.12□□□□□ -1.11
LINC00643-203ENST00000555518 C2CD4AQ8NCU7 369 aaPredicted RBP8.12□□□□□ -1.11
LINC00643-203ENST00000555518 PRKAG2Q9UGJ0 569 aa8.12□□□□□ -1.11
LINC00643-203ENST00000555518 SPATA31A5Q5VU36 1347 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 SPATA31A7Q8IWB4 1347 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 GLI3P10071 1580 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 TRPA1O75762 1119 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 BCAR3O75815 825 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 EIF1AXP47813 144 aaKnown RBP8.11□□□□□ -1.11
LINC00643-203ENST00000555518 EVA1CP58658 441 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 JAG1P78504 1218 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 HGSNATQ68CP4 663 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 CDPF1Q6NVV7 123 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 MPRIPQ6WCQ1 1025 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 FLCNQ8NFG4 579 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 ASAP3Q8TDY4 903 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 RTF1Q92541 710 aaKnown RBP8.11□□□□□ -1.11
LINC00643-203ENST00000555518 SPG7Q9UQ90 795 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.11□□□□□ -1.11
LINC00643-203ENST00000555518 TOGARAM1Q9Y4F4 1720 aa8.11□□□□□ -1.11
LINC00643-203ENST00000555518 PCDH11XQ9BZA7 1347 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 PCDH11YQ9BZA8 1340 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 VAMP4O75379 141 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 TNFRSF21O75509 655 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 CYP11A1P05108 521 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 GSTM4Q03013 218 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 KRT24Q2M2I5 525 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 UNC5CLQ8IV45 518 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 C8orf58Q8NAV2 365 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 ZCRB1Q8TBF4 217 aaKnown RBP8.1□□□□□ -1.11
LINC00643-203ENST00000555518 BABAM1Q9NWV8 329 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 MIS18AQ9NYP9 233 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 LAS1LQ9Y4W2 734 aaKnown RBP8.1□□□□□ -1.11
LINC00643-203ENST00000555518 TNS2Q63HR2 1409 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 HEG1Q9ULI3 1381 aa8.1□□□□□ -1.11
LINC00643-203ENST00000555518 THSD7AQ9UPZ6 1657 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.09□□□□□ -1.11
LINC00643-203ENST00000555518 BIN1O00499 593 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 EREGO14944 169 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 PLIN1O60240 522 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 DRD2P14416 443 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 IRX6P78412 446 aaPredicted RBP8.09□□□□□ -1.11
LINC00643-203ENST00000555518 TAF7Q15545 349 aaPredicted RBP8.09□□□□□ -1.11
LINC00643-203ENST00000555518 VPS72Q15906 364 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 C1orf141Q5JVX7 400 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 IFNL2Q8IZJ0 200 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 STK11IPQ8N1F8 1099 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 DDX54Q8TDD1 881 aaKnown RBP8.09□□□□□ -1.11
LINC00643-203ENST00000555518 SSH1Q8WYL5 1049 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 C8orf37Q96NL8 207 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 KRTAP4-7Q9BYR0 210 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 PAPPAQ13219 1627 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 ATRNO75882 1429 aa8.09□□□□□ -1.11
LINC00643-203ENST00000555518 KCNQ3O43525 872 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 DLGAP3O95886 979 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 C8AP07357 584 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 ADH5P11766 374 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 C20orf194Q5TEA3 1177 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 SLC52A2Q9HAB3 445 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 USP35Q9P2H5 1018 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 TSPYL4Q9UJ04 414 aa8.08□□□□□ -1.12
LINC00643-203ENST00000555518 THRAP3Q9Y2W1 955 aaKnown RBP8.08□□□□□ -1.12
LINC00643-203ENST00000555518 MPSTP25325 297 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 ADMP35318 185 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 EIF4A1P60842 406 aaKnown RBP8.07□□□□□ -1.12
LINC00643-203ENST00000555518 TWISTNBQ3B726 338 aaPredicted RBP8.07□□□□□ -1.12
LINC00643-203ENST00000555518 ALDH1L2Q3SY69 923 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 NFXL1Q6ZNB6 911 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 ZNF428Q96B54 188 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 BCL2L13Q9BXK5 485 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 POLIQ9UNA4 740 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 TNNQ9UQP3 1299 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 MTMR7Q9Y216 660 aa8.07□□□□□ -1.12
LINC00643-203ENST00000555518 RGS12O14924 1447 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 A6NHS1 94 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 ELL2O00472 640 aaPredicted RBP8.06□□□□□ -1.12
LINC00643-203ENST00000555518 FAM13AO94988 1023 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 HSP90AB1P08238 724 aaKnown RBP8.06□□□□□ -1.12
LINC00643-203ENST00000555518 NPR3P17342 541 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 AAMPQ13685 434 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 GATA6Q92908 595 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 CLEC4MQ9H2X3 399 aaPredicted RBP8.06□□□□□ -1.12
LINC00643-203ENST00000555518 PAK6Q9NQU5 681 aaPredicted RBP8.06□□□□□ -1.12
LINC00643-203ENST00000555518 KCPQ6ZWJ8 1503 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 UBR2Q8IWV8 1755 aa8.06□□□□□ -1.12
LINC00643-203ENST00000555518 AFF2P51816 1311 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms