RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 DDX60LQ5H9U9 1706 aaKnown RBP13.37□□□□□ -0.27
SHMT2-212ENST00000554467 NRXN2Q9P2S2 1712 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 CTAGE5O15320 804 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 RAD21O60216 631 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 RESP18Q5W5W9 173 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 TRIM5Q9C035 493 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 KIAA1468Q9P260 1216 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 FBXO2Q9UK22 296 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-212ENST00000554467 MPHOSPH10O00566 681 aaKnown RBP13.36□□□□□ -0.27
SHMT2-212ENST00000554467 CAPN2P17655 700 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 CRKP46108 304 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 TMED8Q6PL24 325 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-212ENST00000554467 AOPEPQ8N6M6 819 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 TEKT1Q969V4 418 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 KCNH3Q9ULD8 1083 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 DLEC1Q9Y238 1755 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 PFKFB3Q16875 520 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-212ENST00000554467 CSRNP2Q9H175 543 aa13.36□□□□□ -0.27
SHMT2-212ENST00000554467 SCN9AQ15858 1988 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 TRIM75PA6NK02 468 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 USP17L5A8MUK1 530 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 KLRF2D3W0D1 207 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 POLR2DO15514 142 aaKnown RBP13.35□□□□□ -0.27
SHMT2-212ENST00000554467 ZRSR1Q15695 479 aaKnown RBP13.35□□□□□ -0.27
SHMT2-212ENST00000554467 DDX41Q9UJV9 622 aaKnown RBP13.35□□□□□ -0.27
SHMT2-212ENST00000554467 CUTAO60888 179 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 GRM4Q14833 912 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 IQCB1Q15051 598 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 EPSTI1Q96J88 318 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.35□□□□□ -0.27
SHMT2-212ENST00000554467 BECN2A8MW95 431 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 MCM7P33993 719 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 WWC2Q6AWC2 1192 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 NEDD1Q8NHV4 660 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 HPSEQ9Y251 543 aa13.35□□□□□ -0.27
SHMT2-212ENST00000554467 GOLGA6L19H0YKK7 550 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 PTGS1P23219 599 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 GABPB1Q06547 395 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-212ENST00000554467 ZSCAN29Q8IWY8 852 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-212ENST00000554467 CNNM3Q8NE01 707 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 ZNF287Q9HBT7 754 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 BRMS1Q9HCU9 246 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 ANO10Q9NW15 660 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 NRBP1Q9UHY1 535 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 TERF2Q15554 542 aa13.34□□□□□ -0.27
SHMT2-212ENST00000554467 METTL16Q86W50 562 aaKnown RBP13.34□□□□□ -0.27
SHMT2-212ENST00000554467 DHX40Q8IX18 779 aaKnown RBP13.34□□□□□ -0.27
SHMT2-212ENST00000554467 PPIP5K2O43314 1243 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 PTPREP23469 700 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 HMGB2P26583 209 aaKnown RBP13.33□□□□□ -0.27
SHMT2-212ENST00000554467 CASP1P29466 404 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 DACT2Q5SW24 774 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 STYK1Q6J9G0 422 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 PODNQ7Z5L7 613 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 FOXP4Q8IVH2 680 aaPredicted RBP13.33□□□□□ -0.27
SHMT2-212ENST00000554467 TNFRSF25Q93038 417 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 CLIP2Q9UDT6 1046 aa13.33□□□□□ -0.27
SHMT2-212ENST00000554467 VWA3AA6NCI4 1184 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 TTC38Q5R3I4 469 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 OSBPL5Q9H0X9 879 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-212ENST00000554467 GPCPD1Q9NPB8 672 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 SERTAD1Q9UHV2 236 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 SERPINB13Q9UIV8 391 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 MORC2Q9Y6X9 1032 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-212ENST00000554467 PARP1P09874 1014 aaKnown RBP13.33□□□□□ -0.28
SHMT2-212ENST00000554467 PRR29P0C7W0 189 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 CDC25AP30304 524 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 PTGDRQ13258 359 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 CEP57L1Q8IYX8 460 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 TCP11L1Q9NUJ3 509 aa13.33□□□□□ -0.28
SHMT2-212ENST00000554467 A0A087X0B3 334 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 DDTLA6NHG4 134 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-212ENST00000554467 RAD17O75943 681 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 LRMPQ12912 555 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 PAXIP1Q6ZW49 1069 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-212ENST00000554467 ANKS1AQ92625 1134 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 STAMQ92783 540 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 CNKSR1Q969H4 720 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 TDRD3Q9H7E2 651 aaKnown RBP13.32□□□□□ -0.28
SHMT2-212ENST00000554467 PALM3A6NDB9 673 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-212ENST00000554467 YDJCA8MPS7 323 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 HSP90AA4PQ58FG1 418 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 KRBA2Q6ZNG9 492 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 CERS3Q8IU89 383 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 C7orf43Q8WVR3 580 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 DHX58Q96C10 678 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 PIGSQ96S52 555 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 SHMT1P34896 483 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 GABPAQ06546 454 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 CCDC186Q7Z3E2 898 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 RGS22Q8NE09 1264 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 ZNF277Q9NRM2 450 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-212ENST00000554467 MTMR4Q9NYA4 1195 aa13.32□□□□□ -0.28
SHMT2-212ENST00000554467 PPP1R1BQ9UD71 204 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-212ENST00000554467 SRPRBQ9Y5M8 271 aaKnown RBP13.32□□□□□ -0.28
SHMT2-212ENST00000554467 GOLGA6L6A8MZA4 724 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 TULP2O00295 520 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 ZNF75DP51815 510 aa13.31□□□□□ -0.28
SHMT2-212ENST00000554467 SF3B2Q13435 895 aaKnown RBP13.31□□□□□ -0.28
SHMT2-212ENST00000554467 BLIDQ8IZY5 108 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms