RNA–Protein interactions for RNA: ENST00000554028.3

TMEM55B-205, humanhuman

TSL 2

Gene TMEM55B, Length 1,118 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-205ENST00000554028 USP17L10C9JJH3 530 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 PRPF3O43395 683 aaKnown RBP12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 STX6O43752 255 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 SNHG28P0DPA3 235 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 BMP3P12645 472 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 SYT1P21579 422 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 ZNF543Q08ER8 600 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 IKQ13123 557 aaPredicted RBP12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 NTRK3Q16288 839 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 SHROOM1Q2M3G4 852 aaPredicted RBP12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 SIAH1Q8IUQ4 282 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 ZKSCAN4Q969J2 545 aaPredicted RBP12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 ALG1Q9BT22 464 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 WDR18Q9BV38 432 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 ZNF408Q9H9D4 720 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 GPCPD1Q9NPB8 672 aa12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 SEC63Q9UGP8 760 aaKnown RBP12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 V9GY48 417 aaPredicted RBP12.12□□□□□ -0.47
TMEM55B-205ENST00000554028 FRMPD2Q68DX3 1309 aaPredicted RBP12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 VPS37CA5D8V6 355 aaPredicted RBP12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 C19orf81C9J6K1 198 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 PLEKHA8P1O95397 391 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 NDUFB10O96000 172 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 GOLGA8HP0CJ92 632 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 ATXN8OSP0DMR3 200 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 PTPRAP18433 802 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 DDIT3P35638 169 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 FKBP1BP68106 108 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 CMTR1Q8N1G2 835 aaKnown RBP12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 STAG2Q8N3U4 1231 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 SRBD1Q8N5C6 995 aaKnown RBP12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 C2orf69Q8N8R5 385 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 ZNF280CQ8ND82 737 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 RGS22Q8NE09 1264 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 RBM46Q8TBY0 533 aaKnown RBP12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 ACER1Q8TDN7 264 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 CHURC1Q8WUH1 139 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 LPAR1Q92633 364 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 RRP36Q96EU6 259 aaKnown RBP12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 C8orf76Q96K31 380 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 SPZ1Q9BXG8 430 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 KIAA1683Q9H0B3 1180 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 VCPKMTQ9H867 229 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 ATP6V1DQ9Y5K8 247 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 ZHX2Q9Y6X8 837 aa12.11□□□□□ -0.47
TMEM55B-205ENST00000554028 A0A1W2PRG0 241 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 PPFIA3O75145 1194 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 POTEIP0CG38 1075 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 POTEJP0CG39 1038 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 ECE1P42892 770 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 SPP2Q13103 211 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 SAFBQ15424 915 aaKnown RBP eCLIP12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 ZYXQ15942 572 aaKnown RBP12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 MAP3K11Q16584 847 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 DLK2Q6UY11 383 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 NBPF11Q86T75 865 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 VAT1LQ9HCJ6 419 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 TMOD4Q9NZQ9 345 aa12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.1□□□□□ -0.47
TMEM55B-205ENST00000554028 SIPA1L1O43166 1804 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 TRAF5O00463 557 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 ZSCAN22P10073 491 aaPredicted RBP12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 FDPSP14324 419 aaKnown RBP12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 BACE1P56817 501 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 TRAF1Q13077 416 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 GNL2Q13823 731 aaKnown RBP12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 VGLL4Q14135 290 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 KCTD1Q719H9 257 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 FAM160B2Q86V87 743 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 ERO1BQ86YB8 467 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 SPICE1Q8N0Z3 855 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 CCDC12Q8WUD4 166 aaPredicted RBP12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 PIBF1Q8WXW3 757 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 SLC10A4Q96EP9 437 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 UBA5Q9GZZ9 404 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 FEM1BQ9UK73 627 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 FZD1Q9UP38 647 aa12.09□□□□□ -0.47
TMEM55B-205ENST00000554028 TRIM75PA6NK02 468 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 TMEM232C9JQI7 657 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 UBE2Q2LH0YL09 131 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 WDR46O15213 610 aaKnown RBP12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 DTNBO60941 627 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 CELF2O95319 508 aaKnown RBP12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 BRD1O95696 1058 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 SCG2P13521 617 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 STAT2P52630 851 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 PPATQ06203 517 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 FUT2Q10981 343 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 MTMR2Q13614 643 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 PFKFB3Q16875 520 aaPredicted RBP12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 MCTP1Q6DN14 999 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 CCDC84Q86UT8 332 aaPredicted RBP12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 FAM177A1Q8N128 213 aaPredicted RBP12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 ZSCAN16Q9H4T2 348 aaPredicted RBP12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 RIOX1Q9H6W3 641 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 ELP3Q9H9T3 547 aa12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 GBA2Q9HCG7 927 aaPredicted RBP12.08□□□□□ -0.48
TMEM55B-205ENST00000554028 BRMS1Q9HCU9 246 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms