RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 FAM173BQ6P4H8 233 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 ADGRA1Q86SQ6 560 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 CERS3Q8IU89 383 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 CNBD1Q8NA66 436 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 RBM17Q96I25 401 aaKnown RBP7□□□□□ -1.29
VIPAS39-204ENST00000553576 PGBD1Q96JS3 809 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 C8orf76Q96K31 380 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 POLR3EQ9NVU0 708 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 RAI14Q9P0K7 980 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 TFIP11Q9UBB9 837 aaKnown RBP7□□□□□ -1.29
VIPAS39-204ENST00000553576 ABCF2Q9UG63 623 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 LTBP1Q14766 1721 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 XDHP47989 1333 aa7□□□□□ -1.29
VIPAS39-204ENST00000553576 CCDC196A0A1B0GTZ2 297 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 A0A1W2PQ27 194 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 A0A1W2PQ64 194 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 A0A1W2PQD8 194 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 GOLGA6L4A6NEF3 574 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 IFIT3O14879 490 aaKnown RBP6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 CTAGE5O15320 804 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 ORC4O43929 436 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 DTNBO60941 627 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 YEATS4O95619 227 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 CAVIN2O95810 425 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 IL1R1P14778 569 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 CDC27P30260 824 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 CTHP32929 405 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 TDO2P48775 406 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 MARSP56192 900 aaKnown RBP6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 RBM6P78332 1123 aaKnown RBP6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 ST5P78524 1137 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 MECOMQ03112 1051 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 SEC23AQ15436 765 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 C4orf48Q5BLP8 95 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 ADALQ6DHV7 355 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 CTR9Q6PD62 1173 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 SYNE3Q6ZMZ3 975 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 TXNRD3Q86VQ6 643 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 WASF1Q92558 559 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 ESR2Q92731 530 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 CCDC102AQ96A19 550 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 SCARF2Q96GP6 870 aaPredicted RBP6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 TSEN34Q9BSV6 310 aaKnown RBP6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 INCENPQ9NQS7 918 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 MKRN1Q9UHC7 482 aaKnown RBP6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 SLC12A7Q9Y666 1083 aa6.99□□□□□ -1.29
VIPAS39-204ENST00000553576 ERICH2A1L162 156 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 CCDC69A6NI79 296 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 TTLL8A6PVC2 850 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 POLRMTO00411 1230 aaKnown RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 ADAM23O75077 832 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 LDHCP07864 332 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 CCDC192P0DO97 292 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 LIG1P18858 919 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 NDUFV2P19404 249 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 U2AF2P26368 475 aaKnown RBP eCLIP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 KLRK1P26718 216 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 IARSP41252 1262 aaKnown RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 GSTO1P78417 241 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 SSRP1Q08945 709 aaKnown RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 MTMR2Q13614 643 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 WTAPQ15007 396 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 MAP3K11Q16584 847 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 TXNRD1Q16881 649 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 ZNF772Q68DY9 489 aaPredicted RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 ZNF804AQ7Z570 1209 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 SP8Q8IXZ3 490 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 NLGN1Q8N2Q7 840 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 CCDC155Q8N6L0 562 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 MIGA1Q8NAN2 632 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 FANCBQ8NB91 859 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 LINC00301Q8NCQ3 95 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 FLAD1Q8NFF5 587 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 ENGASEQ8NFI3 743 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 SPIRE2Q8WWL2 714 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 ANKS1AQ92625 1134 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 RPGRQ92834 1020 aaKnown RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 USP28Q96RU2 1077 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 KRTAP4-8Q9BYQ9 185 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 CRNKL1Q9BZJ0 848 aaKnown RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 NUP62CLQ9H1M0 184 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 CLSTN2Q9H4D0 955 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 DCP1AQ9NPI6 582 aaPredicted RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 NAP1L2Q9ULW6 460 aaPredicted RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 IQSEC3Q9UPP2 1182 aaPredicted RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 MORC2Q9Y6X9 1032 aaPredicted RBP6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 QSER1Q2KHR3 1735 aa6.98□□□□□ -1.29
VIPAS39-204ENST00000553576 MOXD2PA6NHM9 499 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 SPDYE5A6NIY4 337 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 GOLGA8AA7E2F4 631 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 RANBP6O60518 1105 aaKnown RBP6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 PPP6R2O75170 966 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 TRIM37O94972 964 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 SLC3A2P08195 630 aaKnown RBP6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 CALM1P0DP23 149 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 CALM2P0DP24 149 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 CALM3P0DP25 149 aa6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 DYNLL1P63167 89 aaKnown RBP6.97□□□□□ -1.29
VIPAS39-204ENST00000553576 KIF23Q02241 960 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms