RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 HOXD11P31277 338 aaPredicted RBP15.76■□□□□ 0.11
VPS29-211ENST00000553128 TMEM132BQ14DG7 1078 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 TTC6Q86TZ1 520 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 SIAH1Q8IUQ4 282 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 SPICE1Q8N0Z3 855 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 TOX2Q96NM4 488 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 TINF2Q9BSI4 451 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 ANTXR1Q9H6X2 564 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 STARD7Q9NQZ5 370 aa15.76■□□□□ 0.11
VPS29-211ENST00000553128 DBNLQ9UJU6 430 aaKnown RBP15.76■□□□□ 0.11
VPS29-211ENST00000553128 MYADML2A6NDP7 307 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 DCDC2CA8MYV0 355 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 FLOT1O75955 427 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 CSF2RAP15509 400 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 IGFBP4P22692 258 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 ACLYP53396 1101 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 ZNF792Q3KQV3 632 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 MFSD5Q6N075 450 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 MB21D1Q8N884 522 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 ZNF512BQ96KM6 892 aaPredicted RBP15.75■□□□□ 0.11
VPS29-211ENST00000553128 GPR108Q9NPR9 543 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 NRBP1Q9UHY1 535 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 ROBO3Q96MS0 1386 aa15.75■□□□□ 0.11
VPS29-211ENST00000553128 SYNRGQ9UMZ2 1314 aa15.74■□□□□ 0.11
VPS29-211ENST00000553128 GNAI2P04899 355 aa15.74■□□□□ 0.11
VPS29-211ENST00000553128 CCSAPQ6IQ19 270 aaPredicted RBP15.74■□□□□ 0.11
VPS29-211ENST00000553128 MMP19Q99542 508 aa15.74■□□□□ 0.11
VPS29-211ENST00000553128 RIOK1Q9BRS2 568 aaKnown RBP15.74■□□□□ 0.11
VPS29-211ENST00000553128 CXXC1Q9P0U4 656 aaPredicted RBP15.74■□□□□ 0.11
VPS29-211ENST00000553128 ZNFX1Q9P2E3 1918 aaKnown RBP15.73■□□□□ 0.11
VPS29-211ENST00000553128 POLR3DP05423 398 aaPredicted RBP15.73■□□□□ 0.11
VPS29-211ENST00000553128 CYP2D6P10635 497 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 AKR1A1P14550 325 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 RARSP54136 660 aaKnown RBP15.73■□□□□ 0.11
VPS29-211ENST00000553128 TFF2Q03403 129 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 KCNA10Q16322 511 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 ZNF365Q70YC5 407 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 KLHDC9Q8NEP7 349 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 TSEN34Q9BSV6 310 aaKnown RBP15.73■□□□□ 0.11
VPS29-211ENST00000553128 CCDC8Q9H0W5 538 aaPredicted RBP15.73■□□□□ 0.11
VPS29-211ENST00000553128 NKX2-4Q9H2Z4 354 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 FBXO28Q9NVF7 368 aa15.73■□□□□ 0.11
VPS29-211ENST00000553128 YBX2Q9Y2T7 364 aaKnown RBP15.73■□□□□ 0.11
VPS29-211ENST00000553128 NCOR1O75376 2440 aa15.72■□□□□ 0.11
VPS29-211ENST00000553128 BMP1P13497 986 aa15.72■□□□□ 0.11
VPS29-211ENST00000553128 CDK7P50613 346 aa15.72■□□□□ 0.11
VPS29-211ENST00000553128 PPIGQ13427 754 aaKnown RBP eCLIP15.72■□□□□ 0.11
VPS29-211ENST00000553128 POLA2Q14181 598 aa15.72■□□□□ 0.11
VPS29-211ENST00000553128 PPP1R12CQ9BZL4 782 aa15.72■□□□□ 0.11
VPS29-211ENST00000553128 TCF20Q9UGU0 1960 aaKnown RBP15.71■□□□□ 0.11
VPS29-211ENST00000553128 PARP14Q460N5 1801 aa15.71■□□□□ 0.11
VPS29-211ENST00000553128 SMIM22K7EJ46 135 aa15.71■□□□□ 0.11
VPS29-211ENST00000553128 ADCY6O43306 1168 aa15.71■□□□□ 0.11
VPS29-211ENST00000553128 IGSF3O75054 1194 aa15.71■□□□□ 0.11
VPS29-211ENST00000553128 OS9Q13438 667 aaPredicted RBP15.71■□□□□ 0.11
VPS29-211ENST00000553128 NUP133Q8WUM0 1156 aa15.71■□□□□ 0.11
VPS29-211ENST00000553128 EAF2Q96CJ1 260 aaPredicted RBP15.71■□□□□ 0.11
VPS29-211ENST00000553128 DYNLL2Q96FJ2 89 aa15.71■□□□□ 0.11
VPS29-211ENST00000553128 COL11A1P12107 1806 aaPredicted RBP15.71■□□□□ 0.1
VPS29-211ENST00000553128 MYO9BQ13459 2157 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 NAV1Q8NEY1 1877 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 SLC25A27O95847 323 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 SNAI1O95863 264 aaPredicted RBP15.7■□□□□ 0.1
VPS29-211ENST00000553128 TRIM27P14373 513 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 AKR1B1P15121 316 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 KCNQ1P51787 676 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 TMEM179Q6ZVK1 233 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 CERS3Q8IU89 383 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 RIOX2Q8IUF8 465 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 IL27Q8NEV9 243 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 ARHGAP45Q92619 1136 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 VCPKMTQ9H867 229 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 MCM9Q9NXL9 1143 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 ADAMTS5Q9UNA0 930 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 DIS3Q9Y2L1 958 aaKnown RBP15.7■□□□□ 0.1
VPS29-211ENST00000553128 TMX2Q9Y320 296 aa15.7■□□□□ 0.1
VPS29-211ENST00000553128 MOXD2PA6NHM9 499 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 SURF6O75683 361 aaKnown RBP15.69■□□□□ 0.1
VPS29-211ENST00000553128 BCAR3O75815 825 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 CT47B1P0C2W7 299 aaPredicted RBP15.69■□□□□ 0.1
VPS29-211ENST00000553128 CYP2C18P33260 490 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 KCTD2Q14681 263 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 MICALL1Q8N3F8 863 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 REPS2Q8NFH8 660 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 SDR42E1Q8WUS8 393 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 EPHX3Q9H6B9 360 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 ZNF214Q9UL59 606 aaPredicted RBP15.69■□□□□ 0.1
VPS29-211ENST00000553128 CNPY2Q9Y2B0 182 aa15.69■□□□□ 0.1
VPS29-211ENST00000553128 UMODL1Q5DID0 1318 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 MAGEB6P1A0A0J9YX57 407 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 APBB1O00213 710 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 WDR46O15213 610 aaKnown RBP15.68■□□□□ 0.1
VPS29-211ENST00000553128 ASGR1P07306 291 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 MYOGP15173 224 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 STAT3P40763 770 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 RABGGTBP53611 331 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 ICA1Q05084 483 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 RAB30Q15771 203 aa15.68■□□□□ 0.1
VPS29-211ENST00000553128 PSRC1Q6PGN9 363 aaPredicted RBP15.68■□□□□ 0.1
VPS29-211ENST00000553128 FAM126BQ8IXS8 530 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms