RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 LRP2BPQ9P2M1 347 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ASAP1Q9ULH1 1129 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 TMEM94Q12767 1356 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 MACROD2A1Z1Q3 448 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ANKRD18BA2A2Z9 1011 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 GOLGA6CA6NDK9 693 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 PLEKP08567 350 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 GOLGA6DP0CG33 693 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ADD2P35612 726 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 MATR3P43243 847 aaKnown RBP eCLIP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ATP1A2P50993 1020 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 COPB1P53618 953 aaKnown RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 PDCLQ13371 301 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ZNF174Q15697 407 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CYP26C1Q6V0L0 522 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 TMTC1Q8IUR5 882 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CNGA4Q8IV77 575 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 MIGA1Q8NAN2 632 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 JAKMIP2Q96AA8 810 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 FAM212AQ96EL1 285 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ACSBG1Q96GR2 724 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 LRRC1Q9BTT6 524 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 DEF6Q9H4E7 631 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 VIPAS39Q9H9C1 493 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 GOLGA6AQ9NYA3 693 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 SLC12A7Q9Y666 1083 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 AKAP11Q9UKA4 1901 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 USP54Q70EL1 1684 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ZSCAN5CA6NGD5 496 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 NUTM2BA6NNL0 878 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 NUTM2EB1AL46 878 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 TULP1O00294 542 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 PSMD14O00487 310 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ZNF263O14978 683 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 KRT14P02533 472 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ITGA6P23229 1130 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 MNAT1P51948 309 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 GSCP56915 257 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 GNGT1P63211 74 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 APBA1Q02410 837 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 UBXN1Q04323 297 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 TRADDQ15628 312 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CCDC122Q5T0U0 273 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 SND1Q7KZF4 910 aaKnown RBP eCLIP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 SGMS1Q86VZ5 419 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 TEX2Q8IWB9 1127 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 ELOA2Q8IYF1 753 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-214ENST00000552783 TRIML1Q8N9V2 468 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 CD248Q9HCU0 757 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 SAR1BQ9Y6B6 198 aa5.46□□□□□ -1.54
LIMA1-214ENST00000552783 MEGF6O75095 1541 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 PKD1L3Q7Z443 1732 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 LAMB4A4D0S4 1761 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 CDKL5O76039 1030 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 IFNAR1P17181 557 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 PHKA1P46020 1223 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 EVX2Q03828 476 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 SPRED3Q2MJR0 410 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 MAP9Q49MG5 647 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 TCP11X2Q5H9J9 407 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 RRAGBQ5VZM2 374 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 PAPD7Q5XG87 772 aaKnown RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 CHADLQ6NUI6 762 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 CRACR2BQ8N4Y2 399 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 FAM76AQ8TAV0 307 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 AENQ8WTP8 325 aaKnown RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 JPH2Q9BR39 696 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 CAPS2Q9BXY5 557 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 CXorf56Q9H5V9 222 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 DACH1Q9UI36 760 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 TJP1Q07157 1748 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 BCL9LQ86UU0 1499 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 TCRBV5S4A2TA0A5A2 114 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 GOLGA6BA6NDN3 693 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 LRRC10BA6NIK2 292 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 KCNJ18B7U540 433 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 IRS4O14654 1257 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 EIF3HO15372 352 aaKnown RBP eCLIP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 ZPR1O75312 459 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 ECM2O94769 699 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 MYCNP04198 464 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 PRCPP42785 496 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 FNTAP49354 379 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 ATP2B2Q01814 1243 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 KCNJ12Q14500 433 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 RILPL1Q5EBL4 403 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 SWT1Q5T5J6 900 aaKnown RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 ZNF579Q8NAF0 562 aaKnown RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 STRBPQ96SI9 672 aaKnown RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 CRACR2AQ9BSW2 395 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 GBP3Q9H0R5 595 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 ARMT1Q9H993 441 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 LIMA1Q9UHB6 759 aaKnown RBP5.45□□□□□ -1.54
LIMA1-214ENST00000552783 CAPN6Q9Y6Q1 641 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 ITIH6Q6UXX5 1313 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 WDR19Q8NEZ3 1342 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 PCDH11XQ9BZA7 1347 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 PCDH11YQ9BZA8 1340 aa5.45□□□□□ -1.54
LIMA1-214ENST00000552783 ESYT3A0FGR9 886 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 FAM153BP0C7A2 387 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms