RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NOL10Q9BSC4 688 aaKnown RBP8.51□□□□□ -1.05
LIMA1-213ENST00000552720 PARD6BQ9BYG5 372 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 ARGLU1Q9NWB6 273 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-213ENST00000552720 MINPP1Q9UNW1 487 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 COL5A3P25940 1745 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-213ENST00000552720 FAM205AQ6ZU69 1335 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 GOLGA6L9A6NEM1 432 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 MFAP3LO75121 409 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 ADAMTS2O95450 1211 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 PRDX5P30044 214 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 ERVK-24P63145 666 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 ATP2C1P98194 919 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-213ENST00000552720 MECOMQ03112 1051 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 KRT31Q15323 416 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 DDB1Q16531 1140 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 RRAGBQ5VZM2 374 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 PDXDC2PQ6P474 469 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 GPKOWQ92917 476 aaPredicted RBP eCLIP8.5□□□□□ -1.05
LIMA1-213ENST00000552720 FERMT2Q96AC1 680 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 NSUN4Q96CB9 384 aaKnown RBP8.5□□□□□ -1.05
LIMA1-213ENST00000552720 GSDMAQ96QA5 445 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 PANX2Q96RD6 677 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 CDC5LQ99459 802 aaKnown RBP8.5□□□□□ -1.05
LIMA1-213ENST00000552720 BRIP1Q9BX63 1249 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 TAB2Q9NYJ8 693 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 MTMR7Q9Y216 660 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 GDAQ9Y2T3 454 aa8.5□□□□□ -1.05
LIMA1-213ENST00000552720 TRIM49BA6NDI0 452 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 PP2D1A8MPX8 630 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 NLRP5P59047 1200 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 CAVIN4Q5BKX8 364 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 ZNF569Q5MCW4 686 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 PLIN2Q99541 437 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 DCP1AQ9NPI6 582 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-213ENST00000552720 GNL3LQ9NVN8 582 aaKnown RBP8.49□□□□□ -1.05
LIMA1-213ENST00000552720 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.49□□□□□ -1.05
LIMA1-213ENST00000552720 ROBO1Q9Y6N7 1651 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 N4BP3O15049 544 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 FGRP09769 529 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 SCG2P13521 617 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 GYS2P54840 703 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 UBE4AQ14139 1066 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 PPP2R5BQ15173 497 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 RCSD1Q6JBY9 416 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 TYW1BQ6NUM6 668 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 TXNRD3Q86VQ6 643 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 STAG2Q8N3U4 1231 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 CTCFLQ8NI51 663 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-213ENST00000552720 RBM28Q9NW13 759 aaKnown RBP8.49□□□□□ -1.05
LIMA1-213ENST00000552720 COL22A1Q8NFW1 1626 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-213ENST00000552720 EP400Q96L91 3159 aa8.49□□□□□ -1.05
LIMA1-213ENST00000552720 USP17L8P0C7I0 530 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 ST5P78524 1137 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 RASGRP2Q7LDG7 609 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 SLC35F6Q8N357 371 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 GPR161Q8N6U8 529 aaKnown RBP8.48□□□□□ -1.05
LIMA1-213ENST00000552720 EEF2KMTQ96G04 330 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 BRMS1Q9HCU9 246 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 BSDC1Q9NW68 430 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-213ENST00000552720 TFR2Q9UP52 801 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 TSPY2A6NKD2 308 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 DDAH1O94760 285 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 OAS2P29728 719 aaKnown RBP8.48□□□□□ -1.05
LIMA1-213ENST00000552720 PRCPP42785 496 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 PMS1P54277 932 aaKnown RBP8.48□□□□□ -1.05
LIMA1-213ENST00000552720 IQUBQ8NA54 791 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 NELFBQ8WX92 580 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 GOLGA1Q92805 767 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 DYNLL2Q96FJ2 89 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 CHP1Q99653 195 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 TRIM10Q9UDY6 481 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 SBF2Q86WG5 1849 aa8.48□□□□□ -1.05
LIMA1-213ENST00000552720 CALM1P0DP23 149 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 CALM2P0DP24 149 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 CALM3P0DP25 149 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 COPB1P53618 953 aaKnown RBP8.47□□□□□ -1.05
LIMA1-213ENST00000552720 CHMP4BP1P59074 171 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 PFKFB3Q16875 520 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-213ENST00000552720 SLC35G1Q2M3R5 365 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 FILIP1LQ4L180 1135 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 TBC1D9BQ66K14 1250 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 C4orf32Q8N8J7 132 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 LINC00116Q8NCU8 138 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 LRRC15Q8TF66 581 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 RABGGTAQ92696 567 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 CTAGE1Q96RT6 745 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 PNKPQ96T60 521 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 NUP88Q99567 741 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-213ENST00000552720 SLF1Q9BQI6 1058 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 FUT8Q9BYC5 575 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 CPVLQ9H3G5 476 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 ANKZF1Q9H8Y5 726 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 SUGCTQ9HAC7 445 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 IL17RBQ9NRM6 502 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 ABHD10Q9NUJ1 306 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 CDK5RAP2Q96SN8 1893 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 SPATA31A1Q5TZJ5 1347 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 MYH10P35580 1976 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 KCNJ18B7U540 433 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 KIF5CO60282 957 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms