RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SPP2Q13103 211 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 RTN1Q16799 776 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 SLFN13Q68D06 897 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 MOB2Q70IA6 237 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 PRRT2Q7Z6L0 340 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 CLEC10AQ8IUN9 316 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 PROCA1Q8NCQ7 364 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 NSUN7Q8NE18 718 aaKnown RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 CTCFLQ8NI51 663 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 SLC10A4Q96EP9 437 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 RNF26Q9BY78 433 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 CWC22Q9HCG8 908 aaKnown RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 EMILIN3Q9NT22 766 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 RBM27Q9P2N5 1060 aaKnown RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.16□□□□□ -0.62
LIMA1-211ENST00000552338 ZHX2Q9Y6X8 837 aa11.16□□□□□ -0.62
LIMA1-211ENST00000552338 TESPA1A2RU30 521 aaPredicted RBP11.15□□□□□ -0.62
LIMA1-211ENST00000552338 GOLGA8AA7E2F4 631 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 GOLGA8BA8MQT2 603 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 PRPF3O43395 683 aaKnown RBP11.15□□□□□ -0.62
LIMA1-211ENST00000552338 CDKL5O76039 1030 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 PARP1P09874 1014 aaKnown RBP11.15□□□□□ -0.62
LIMA1-211ENST00000552338 FDX1P10109 184 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 ADD1P35611 737 aaKnown RBP11.15□□□□□ -0.62
LIMA1-211ENST00000552338 DDIT3P35638 169 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 HMGN5P82970 282 aaKnown RBP11.15□□□□□ -0.62
LIMA1-211ENST00000552338 MOGSQ13724 837 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 PRKG1Q13976 671 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 KIAA1755Q5JYT7 1200 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 TMTC3Q6ZXV5 915 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 MICU3Q86XE3 530 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 LRRC47Q8N1G4 583 aaKnown RBP11.15□□□□□ -0.62
LIMA1-211ENST00000552338 CLMNQ96JQ2 1002 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 LARP6Q9BRS8 491 aaKnown RBP11.15□□□□□ -0.62
LIMA1-211ENST00000552338 ADAMTS5Q9UNA0 930 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 SLC45A1Q9Y2W3 748 aa11.15□□□□□ -0.62
LIMA1-211ENST00000552338 MYPNQ86TC9 1320 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 TMEM88BA6NKF7 163 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 KLRF2D3W0D1 207 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 IRF6O14896 467 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 CYTH3O43739 400 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 FMNL1O95466 1100 aaPredicted RBP11.14□□□□□ -0.63
LIMA1-211ENST00000552338 BMP3P12645 472 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 GJA5P36382 358 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 SLC1A4P43007 532 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 CCT2P78371 535 aaKnown RBP11.14□□□□□ -0.63
LIMA1-211ENST00000552338 SLC35G1Q2M3R5 365 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 CPLX2Q6PUV4 134 aaKnown RBP11.14□□□□□ -0.63
LIMA1-211ENST00000552338 LBX2Q6XYB7 198 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 FAM160B2Q86V87 743 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 TEX2Q8IWB9 1127 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 CCDC83Q8IWF9 413 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 STAG2Q8N3U4 1231 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 SRBD1Q8N5C6 995 aaKnown RBP11.14□□□□□ -0.63
LIMA1-211ENST00000552338 OPTNQ96CV9 577 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 WNK4Q96J92 1243 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 MS4A4AQ96JQ5 239 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 MYL10Q9BUA6 226 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.14□□□□□ -0.63
LIMA1-211ENST00000552338 FEM1BQ9UK73 627 aa11.14□□□□□ -0.63
LIMA1-211ENST00000552338 CNTNAP5Q8WYK1 1306 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 FDPSP14324 419 aaKnown RBP11.13□□□□□ -0.63
LIMA1-211ENST00000552338 MTMR2Q13614 643 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 TTLL12Q14166 644 aaPredicted RBP11.13□□□□□ -0.63
LIMA1-211ENST00000552338 SPRYD7Q5W111 196 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 RGMBQ6NW40 437 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 CATSPERGQ6ZRH7 1159 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 FASTKD5Q7L8L6 764 aaKnown RBP11.13□□□□□ -0.63
LIMA1-211ENST00000552338 CCDC84Q86UT8 332 aaPredicted RBP11.13□□□□□ -0.63
LIMA1-211ENST00000552338 NECAB1Q8N987 351 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 CHURC1Q8WUH1 139 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 NUP133Q8WUM0 1156 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 MAF1Q9H063 256 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 ELP3Q9H9T3 547 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 ZCCHC17Q9NP64 241 aaKnown RBP11.13□□□□□ -0.63
LIMA1-211ENST00000552338 SMCHD1A6NHR9 2005 aa11.13□□□□□ -0.63
LIMA1-211ENST00000552338 A0A0G2JMZ2 1700 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 COL11A1P12107 1806 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-211ENST00000552338 hCG_1984214I3L0E3 225 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 CPLX1O14810 134 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 DEXIO95424 95 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 SLC10A3P09131 477 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 VCAM1P19320 739 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 RXRAP19793 462 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 STAT2P52630 851 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 GTF2A2P52657 109 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 HUNKP57058 714 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 INHBEP58166 350 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 STK3Q13188 491 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 SNAPC2Q13487 334 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 PKN1Q16512 942 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 NOL8Q76FK4 1167 aaKnown RBP11.12□□□□□ -0.63
LIMA1-211ENST00000552338 ZNF713Q8N859 430 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-211ENST00000552338 CCDC102AQ96A19 550 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 ZNF408Q9H9D4 720 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 NCOA5Q9HCD5 579 aaKnown RBP11.12□□□□□ -0.63
LIMA1-211ENST00000552338 CREBZFQ9NS37 354 aa11.12□□□□□ -0.63
LIMA1-211ENST00000552338 PTPDC1A2A3K4 754 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 RASSF10A6NK89 507 aa11.11□□□□□ -0.63
LIMA1-211ENST00000552338 FAM155AB1AL88 458 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms