RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NFICP08651 508 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 SOX4Q06945 474 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-208ENST00000551691 TXNRD1Q16881 649 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 AKAP4Q5JQC9 854 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 EXOSC6Q5RKV6 272 aaKnown RBP5.27□□□□□ -1.57
LIMA1-208ENST00000551691 GIMAP7Q8NHV1 300 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 ERBINQ96RT1 1412 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 BHLHE41Q9C0J9 482 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-208ENST00000551691 SUGCTQ9HAC7 445 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 NPHS2Q9NP85 383 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 NWD2Q9ULI1 1742 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 R3HCC1Q9Y3T6 440 aaKnown RBP5.27□□□□□ -1.57
LIMA1-208ENST00000551691 ACTL7BQ9Y614 415 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 THSD7AQ9UPZ6 1657 aa5.27□□□□□ -1.57
LIMA1-208ENST00000551691 NRAPQ86VF7 1730 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 ADGRB2O60241 1585 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 U2SURPO15042 1029 aaKnown RBP5.26□□□□□ -1.57
LIMA1-208ENST00000551691 CYP26A1O43174 497 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 GRIN3BO60391 1043 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 CTSHP09668 335 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 HSPA1AP0DMV8 641 aaKnown RBP5.26□□□□□ -1.57
LIMA1-208ENST00000551691 HSPA1BP0DMV9 641 aaKnown RBP5.26□□□□□ -1.57
LIMA1-208ENST00000551691 ADH5P11766 374 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 MAOBP27338 520 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 GSTT1P30711 240 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 GRIA4P48058 902 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 ST13P50502 369 aaKnown RBP5.26□□□□□ -1.57
LIMA1-208ENST00000551691 EVA1CP58658 441 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 PCDH1Q08174 1060 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 PWP1Q13610 501 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 NFE2L2Q16236 605 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 ZNF423Q2M1K9 1284 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 USPL1Q5W0Q7 1092 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 DYMQ7RTS9 669 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 ZAR1Q86SH2 424 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 EPS8L3Q8TE67 593 aaKnown RBP5.26□□□□□ -1.57
LIMA1-208ENST00000551691 GPRASP2Q96D09 838 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 MRFAP1L1Q96HT8 127 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 OSBPL2Q9H1P3 480 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 AP4E1Q9UPM8 1137 aa5.26□□□□□ -1.57
LIMA1-208ENST00000551691 A0A096LPE4 126 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 A0A1W2PPZ6 126 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 DYNC1LI2O43237 492 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-208ENST00000551691 RACK1P63244 317 aaKnown RBP5.25□□□□□ -1.57
LIMA1-208ENST00000551691 PAK2Q13177 524 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 BMS1Q14692 1282 aaKnown RBP5.25□□□□□ -1.57
LIMA1-208ENST00000551691 MEI1Q5TIA1 1274 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 DIEXFQ68CQ4 756 aaKnown RBP5.25□□□□□ -1.57
LIMA1-208ENST00000551691 PI16Q6UXB8 463 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 FLCNQ8NFG4 579 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 GMLQ99445 158 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 TRIM55Q9BYV6 548 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 NRSN2Q9GZP1 204 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 ZFYVE28Q9HCC9 887 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 PRDM11Q9NQV5 511 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 FAM105AQ9NUU6 356 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 TRAK1Q9UPV9 953 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 PLEKHH1Q9ULM0 1364 aa5.25□□□□□ -1.57
LIMA1-208ENST00000551691 NAIPQ13075 1403 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 TNS3Q68CZ2 1445 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 A0A1W2PP55 124 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 TLDC2A0PJX2 215 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 TOMM70O94826 608 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 LMNB1P20700 586 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 CCDC85BQ15834 202 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-208ENST00000551691 ZNF827Q17R98 1081 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 TMEM132EQ6IEE7 984 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 OGFOD2Q6N063 350 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 NXPE4Q6UWF7 544 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 ZNF574Q6ZN55 896 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-208ENST00000551691 ZNF765Q7L2R6 523 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 VSIG10LQ86VR7 867 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 RELL1Q8IUW5 271 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 KIAA0825Q8IV33 1275 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 CPLX3Q8WVH0 158 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 GATA6Q92908 595 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 SPON2Q9BUD6 331 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 BCO2Q9BYV7 579 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 EHD4Q9H223 541 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 SOX17Q9H6I2 414 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-208ENST00000551691 NMRK2Q9NPI5 230 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 ZC3H7BQ9UGR2 993 aaKnown RBP5.24□□□□□ -1.57
LIMA1-208ENST00000551691 MAP3K5Q99683 1374 aa5.24□□□□□ -1.57
LIMA1-208ENST00000551691 MYOM3Q5VTT5 1437 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 TNS2Q63HR2 1409 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 IBSPP21815 317 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-208ENST00000551691 PTPN12Q05209 780 aaKnown RBP5.23□□□□□ -1.57
LIMA1-208ENST00000551691 POU4F3Q15319 338 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 SDE2Q6IQ49 451 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 TCP11L2Q8N4U5 519 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 MARCH10Q8NA82 808 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-208ENST00000551691 TCF12Q99081 682 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 OSBPL7Q9BZF2 842 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 CLEC4MQ9H2X3 399 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-208ENST00000551691 SEMA6CQ9H3T2 930 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 LIN7BQ9HAP6 207 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 RAD18Q9NS91 495 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 DAGLAQ9Y4D2 1042 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 USP31Q70CQ4 1352 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 KIAA0232Q92628 1395 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms