RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 NR0B2Q15466 257 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 WIPI1Q5MNZ9 446 aaPredicted RBP6.46□□□□□ -1.38
VPS29-205ENST00000548539 SV2BQ7L1I2 683 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 SPPL2CQ8IUH8 684 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 DRC1Q96MC2 740 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 GPATCH2Q9NW75 528 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 OTOL1A6NHN0 477 aaPredicted RBP6.45□□□□□ -1.38
VPS29-205ENST00000548539 ADRB1P08588 477 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 GRK4P32298 578 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 LIG3P49916 1009 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 NFKB2Q00653 900 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 GNL2Q13823 731 aaKnown RBP6.45□□□□□ -1.38
VPS29-205ENST00000548539 SNX17Q15036 470 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 Q96M66 194 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 TMEM74Q96NL1 305 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 SPON2Q9BUD6 331 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 RSRP1Q9BUV0 290 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 TANGO6Q9C0B7 1094 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 ADAMTS1Q9UHI8 967 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 GPR160Q9UJ42 338 aa6.45□□□□□ -1.38
VPS29-205ENST00000548539 SF3A1Q15459 793 aaKnown RBP6.44□□□□□ -1.38
VPS29-205ENST00000548539 TTBK2Q6IQ55 1244 aa6.44□□□□□ -1.38
VPS29-205ENST00000548539 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.44□□□□□ -1.38
VPS29-205ENST00000548539 PHC3Q8NDX5 983 aa6.44□□□□□ -1.38
VPS29-205ENST00000548539 ANKRD24Q8TF21 1146 aa6.44□□□□□ -1.38
VPS29-205ENST00000548539 TMPRSS5Q9H3S3 457 aa6.44□□□□□ -1.38
VPS29-205ENST00000548539 IRAK3Q9Y616 596 aa6.44□□□□□ -1.38
VPS29-205ENST00000548539 LOC105371045A0A1W2PR82 267 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 PF4P02776 101 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 PI3P19957 117 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 LTKP29376 864 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 EIF4A3P38919 411 aaKnown RBP6.43□□□□□ -1.38
VPS29-205ENST00000548539 PWP1Q13610 501 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 KIAA0825Q8IV33 1275 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 PANK1Q8TE04 598 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 SIGLEC10Q96LC7 697 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 GPR62Q9BZJ7 368 aa6.43□□□□□ -1.38
VPS29-205ENST00000548539 RLBP1P12271 317 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 TFE3P19532 575 aaPredicted RBP6.42□□□□□ -1.38
VPS29-205ENST00000548539 CDK8P49336 464 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 AFF3P51826 1226 aaKnown RBP6.42□□□□□ -1.38
VPS29-205ENST00000548539 CHRNEQ04844 493 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 SNAP47Q5SQN1 464 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 TSPYL5Q86VY4 417 aaPredicted RBP6.42□□□□□ -1.38
VPS29-205ENST00000548539 SLC43A3Q8NBI5 491 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 ZNF296Q8WUU4 475 aaPredicted RBP6.42□□□□□ -1.38
VPS29-205ENST00000548539 GAL3ST3Q96A11 431 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 GPRASP2Q96D09 838 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 RHOVQ96L33 236 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 DPH2Q9BQC3 489 aaPredicted RBP6.42□□□□□ -1.38
VPS29-205ENST00000548539 PCDHA11Q9Y5I1 949 aa6.42□□□□□ -1.38
VPS29-205ENST00000548539 OR14I1A6ND48 311 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 LMNB1P20700 586 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 ARID5AQ03989 594 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 CAMK2GQ13555 558 aaPredicted RBP6.41□□□□□ -1.38
VPS29-205ENST00000548539 FBXL19Q6PCT2 694 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 MRPL41Q8IXM3 137 aaKnown RBP6.41□□□□□ -1.38
VPS29-205ENST00000548539 ZDHHC14Q8IZN3 488 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 GOLM1Q8NBJ4 401 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 FEZF2Q8TBJ5 459 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 PPP1R13LQ8WUF5 828 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 DACT3Q96B18 629 aaPredicted RBP6.41□□□□□ -1.38
VPS29-205ENST00000548539 KCNH3Q9ULD8 1083 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 PCDHB5Q9Y5E4 795 aa6.41□□□□□ -1.38
VPS29-205ENST00000548539 PSPNO60542 156 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 GTF2F1P35269 517 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS29-205ENST00000548539 GJA8P48165 433 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 SRSF3P84103 164 aaKnown RBP6.4□□□□□ -1.38
VPS29-205ENST00000548539 DUSP4Q13115 394 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 SLC6A19Q695T7 634 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 AGMOQ6ZNB7 445 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 VPS37DQ86XT2 251 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 ANKS4BQ8N8V4 417 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 JARID2Q92833 1246 aaPredicted RBP6.4□□□□□ -1.38
VPS29-205ENST00000548539 EAF1Q96JC9 268 aaPredicted RBP6.4□□□□□ -1.38
VPS29-205ENST00000548539 SIRT5Q9NXA8 310 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 UBP1Q9NZI7 540 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 TJP2Q9UDY2 1190 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 CEP131Q9UPN4 1083 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 TACC3Q9Y6A5 838 aa6.4□□□□□ -1.38
VPS29-205ENST00000548539 PGRP06401 933 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 ATP2B1P20020 1258 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 GARTP22102 1010 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 GALK1P51570 392 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 LMNB2Q03252 620 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 SEPT6Q14141 434 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 ZXDCQ2QGD7 858 aaPredicted RBP6.39□□□□□ -1.39
VPS29-205ENST00000548539 BNC2Q6ZN30 1099 aaPredicted RBP6.39□□□□□ -1.39
VPS29-205ENST00000548539 DTWD2Q8NBA8 298 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 DNAJB8Q8NHS0 232 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 UBXN4Q92575 508 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 TMEM87BQ96K49 555 aa6.39□□□□□ -1.39
VPS29-205ENST00000548539 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS29-205ENST00000548539 MBD1Q9UIS9 605 aaPredicted RBP6.39□□□□□ -1.39
VPS29-205ENST00000548539 SUPT16HQ9Y5B9 1047 aaKnown RBP6.39□□□□□ -1.39
VPS29-205ENST00000548539 SLC22A31A6NKX4 558 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 GFRA2O00451 464 aa6.38□□□□□ -1.39
VPS29-205ENST00000548539 TLR3O15455 904 aaKnown RBP6.38□□□□□ -1.39
VPS29-205ENST00000548539 ATF4P18848 351 aaPredicted RBP6.38□□□□□ -1.39
VPS29-205ENST00000548539 RPS26P62854 115 aaKnown RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms