RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 UBE2Q2LH0YL09 131 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 TRAF1Q13077 416 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 SPP2Q13103 211 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 BTNL9Q6UXG8 535 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 DLK2Q6UY11 383 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 FAM160B2Q86V87 743 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 CCDC83Q8IWF9 413 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 WASF1Q92558 559 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 TMOD4Q9NZQ9 345 aa18.61■□□□□ 0.57
PRPF40A-212ENST00000545856 A0A0G2JLL6 359 aaPredicted RBP18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 TMEM88BA6NKF7 163 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 hCG_1984214I3L0E3 225 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 PDCP20941 246 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 ECE1P42892 770 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 MTMR2Q13614 643 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 NTRK3Q16288 839 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 FASTKD5Q7L8L6 764 aaKnown RBP18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 PRRT2Q7Z6L0 340 aaPredicted RBP18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 TEX2Q8IWB9 1127 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 ZNF713Q8N859 430 aaPredicted RBP18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 CHURC1Q8WUH1 139 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 ELP3Q9H9T3 547 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 FAM217BQ9NTX9 383 aaPredicted RBP18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 FEM1BQ9UK73 627 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 TLL2Q9Y6L7 1015 aa18.6■□□□□ 0.57
PRPF40A-212ENST00000545856 KLRF2D3W0D1 207 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 HUNKP57058 714 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 CCT2P78371 535 aaKnown RBP18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 STK3Q13188 491 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 PABPC4Q13310 644 aaKnown RBP eCLIP18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 SNAPC2Q13487 334 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 SAPCD2Q86UD0 394 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 NSUN7Q8NE18 718 aaKnown RBP18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 OPTNQ96CV9 577 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 MYL10Q9BUA6 226 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 FZD1Q9UP38 647 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 SMC3Q9UQE7 1217 aa18.59■□□□□ 0.57
PRPF40A-212ENST00000545856 DEXIO95424 95 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 FMNL1O95466 1100 aaPredicted RBP18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 CDC27P30260 824 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 ADD1P35611 737 aaKnown RBP18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 STAT2P52630 851 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 GTF2A2P52657 109 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 AKAP17AQ02040 695 aaKnown RBP18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 CCDC96Q2M329 555 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 NECAB1Q8N987 351 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 OTUD5Q96G74 571 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 WNK4Q96J92 1243 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 CLMNQ96JQ2 1002 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 RIOX1Q9H6W3 641 aa18.58■□□□□ 0.57
PRPF40A-212ENST00000545856 BAZ2BQ9UIF8 2168 aaKnown RBP18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 TRIM75PA6NK02 468 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 IRF6O14896 467 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 PRPF3O43395 683 aaKnown RBP18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 SSRP1Q08945 709 aaKnown RBP18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 ST3GAL1Q11201 340 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 MOB2Q70IA6 237 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 CCDC102AQ96A19 550 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 LARP6Q9BRS8 491 aaKnown RBP18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 NCOA5Q9HCD5 579 aaKnown RBP18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 ZCCHC17Q9NP64 241 aaKnown RBP18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 EMILIN3Q9NT22 766 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 SLC45A1Q9Y2W3 748 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 RLFQ13129 1914 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 CNTNAP5Q8WYK1 1306 aa18.57■□□□□ 0.56
PRPF40A-212ENST00000545856 PTPDC1A2A3K4 754 aa18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 VCAM1P19320 739 aa18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 RXRAP19793 462 aa18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 HOXA7P31268 230 aaPredicted RBP18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 FUT2Q10981 343 aa18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 RGMBQ6NW40 437 aa18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 CIZ1Q9ULV3 898 aaPredicted RBP18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 A0A0G2JMZ2 1700 aa18.56■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L15C9J2P7 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L13C9JLJ4 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L11C9JVI0 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L18D6R9N7 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L22D6RA61 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L17D6RBQ6 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L19D6RCP7 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 USP17L20D6RJB6 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 CETPP11597 493 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 XBP1P17861 261 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 HMGCS2P54868 508 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 INHBEP58166 350 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 FMR1Q06787 632 aaKnown RBP eCLIP18.55■□□□□ 0.563e-7■■■■□ 19.7
PRPF40A-212ENST00000545856 USP17L24Q0WX57 530 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 SPRYD7Q5W111 196 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 NBPF11Q86T75 865 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 CCDC144CPQ8IYA2 1237 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 FAM184AQ8NB25 1140 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 GTF3C2Q8WUA4 911 aaPredicted RBP18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 MTMR8Q96EF0 704 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 CREBZFQ9NS37 354 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 SEC63Q9UGP8 760 aaKnown RBP18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 CTDNEP1O95476 244 aa18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 REM2Q8IYK8 340 aaPredicted RBP18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 SRBD1Q8N5C6 995 aaKnown RBP18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 PRPF38AQ8NAV1 312 aaKnown RBP18.55■□□□□ 0.56
PRPF40A-212ENST00000545856 RRP36Q96EU6 259 aaKnown RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms