RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 A0A0U1RQG5 324 aaPredicted RBP17.02■□□□□ 0.31
USP28-214ENST00000545540 MFAP3LO75121 409 aa17.02■□□□□ 0.31
USP28-214ENST00000545540 KLK7P49862 253 aa17.02■□□□□ 0.31
USP28-214ENST00000545540 INF2Q27J81 1249 aa17.02■□□□□ 0.31
USP28-214ENST00000545540 PNKPQ96T60 521 aa17.02■□□□□ 0.31
USP28-214ENST00000545540 CNTNAP5Q8WYK1 1306 aa17.02■□□□□ 0.31
USP28-214ENST00000545540 SRGAP2O75044 1071 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 ERCC5P28715 1186 aaPredicted RBP17.01■□□□□ 0.31
USP28-214ENST00000545540 KRT9P35527 623 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 FILIP1LQ4L180 1135 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 NSUN4Q96CB9 384 aaKnown RBP17.01■□□□□ 0.31
USP28-214ENST00000545540 UTRNP46939 3433 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 N4BP1O75113 896 aaKnown RBP17.01■□□□□ 0.31
USP28-214ENST00000545540 SCG2P13521 617 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 CHMP4BP1P59074 171 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 MRPS25P82663 173 aaKnown RBP17.01■□□□□ 0.31
USP28-214ENST00000545540 HEATR3Q7Z4Q2 680 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 RTL9Q8NET4 1388 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 KIF5CO60282 957 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 ZMYND10O75800 440 aa17.01■□□□□ 0.31
USP28-214ENST00000545540 SMC1AQ14683 1233 aaKnown RBP17.01■□□□□ 0.31
USP28-214ENST00000545540 IQUBQ8NA54 791 aa17■□□□□ 0.31
USP28-214ENST00000545540 ARFGAP3Q9NP61 516 aa17■□□□□ 0.31
USP28-214ENST00000545540 SH3RF1Q7Z6J0 888 aa17■□□□□ 0.31
USP28-214ENST00000545540 TNFRSF25Q93038 417 aa17■□□□□ 0.31
USP28-214ENST00000545540 CAPZA3Q96KX2 299 aa17■□□□□ 0.31
USP28-214ENST00000545540 KCNJ18B7U540 433 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 STAT6P42226 847 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 KCNJ12Q14500 433 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 CDKAL1Q5VV42 579 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 TRIML1Q8N9V2 468 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 ITGB4P16144 1822 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.99■□□□□ 0.31
USP28-214ENST00000545540 LRRC15Q8TF66 581 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 MYH3P11055 1940 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 H3BQF6 201 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 COPB1P53618 953 aaKnown RBP16.99■□□□□ 0.31
USP28-214ENST00000545540 ATP2C1P98194 919 aaPredicted RBP16.99■□□□□ 0.31
USP28-214ENST00000545540 LONRF2Q1L5Z9 754 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 PARP10Q53GL7 1025 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 NOA1Q8NC60 698 aaKnown RBP16.99■□□□□ 0.31
USP28-214ENST00000545540 RGS22Q8NE09 1264 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 GOLGA1Q92805 767 aa16.99■□□□□ 0.31
USP28-214ENST00000545540 PAPPAQ13219 1627 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 PAK1Q13153 545 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 E2F4Q16254 413 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 PDXDC2PQ6P474 469 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 RSRC2Q7L4I2 434 aaKnown RBP16.98■□□□□ 0.31
USP28-214ENST00000545540 AMIGO3Q86WK7 504 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 LINC00116Q8NCU8 138 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 GSDMAQ96QA5 445 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 IL17RBQ9NRM6 502 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 RPN1P04843 607 aaKnown RBP16.98■□□□□ 0.31
USP28-214ENST00000545540 RCSD1Q6JBY9 416 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 FCHSD1Q86WN1 690 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 SRRTQ9BXP5 876 aaKnown RBP16.98■□□□□ 0.31
USP28-214ENST00000545540 USP5P45974 858 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 SLC35G1Q2M3R5 365 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 FKBP15Q5T1M5 1219 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 FERMT2Q96AC1 680 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 MKNK2Q9HBH9 465 aa16.98■□□□□ 0.31
USP28-214ENST00000545540 LRP6O75581 1613 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 TTC26A0AVF1 554 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 HIBADHP31937 336 aaKnown RBP16.97■□□□□ 0.31
USP28-214ENST00000545540 HNRNPH2P55795 449 aaKnown RBP16.97■□□□□ 0.31
USP28-214ENST00000545540 DZIP1Q86YF9 867 aaKnown RBP16.97■□□□□ 0.31
USP28-214ENST00000545540 MAPKAPK5Q8IW41 473 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 GPR161Q8N6U8 529 aaKnown RBP16.97■□□□□ 0.31
USP28-214ENST00000545540 PCMTD1Q96MG8 357 aaPredicted RBP16.97■□□□□ 0.31
USP28-214ENST00000545540 KAT14Q9H8E8 782 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 PDE11AQ9HCR9 933 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 ABHD10Q9NUJ1 306 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 DUSP10Q9Y6W6 482 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 PBX1P40424 430 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 RPS8P62241 208 aaKnown RBP16.97■□□□□ 0.31
USP28-214ENST00000545540 KCTD19Q17RG1 926 aaPredicted RBP16.97■□□□□ 0.31
USP28-214ENST00000545540 TCP11X2Q5H9J9 407 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 PNMA1Q8ND90 353 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 TGFBRAP1Q8WUH2 860 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 PANX2Q96RD6 677 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 FUT8Q9BYC5 575 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 ANKZF1Q9H8Y5 726 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 MYH13Q9UKX3 1938 aa16.97■□□□□ 0.31
USP28-214ENST00000545540 CYP27A1Q02318 531 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 SH3RF3Q8TEJ3 882 aaPredicted RBP16.96■□□□□ 0.31
USP28-214ENST00000545540 ANAPC4Q9UJX5 808 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 DDX60Q8IY21 1712 aaKnown RBP16.96■□□□□ 0.31
USP28-214ENST00000545540 FAM98CQ17RN3 349 aaKnown RBP16.96■□□□□ 0.31
USP28-214ENST00000545540 CRNKL1Q9BZJ0 848 aaKnown RBP16.96■□□□□ 0.31
USP28-214ENST00000545540 ABCB6Q9NP58 842 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 AGPAT5Q9NUQ2 364 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 BSDC1Q9NW68 430 aaPredicted RBP16.96■□□□□ 0.31
USP28-214ENST00000545540 B4DLN1 442 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 TXLNAP40222 546 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 IRF2BP1Q8IU81 584 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 BLIDQ8IZY5 108 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 ANKIB1Q9P2G1 1089 aa16.96■□□□□ 0.31
USP28-214ENST00000545540 CHD4Q14839 1912 aa16.96■□□□□ 0.3
USP28-214ENST00000545540 ZNF804BA4D1E1 1349 aa16.95■□□□□ 0.3
USP28-214ENST00000545540 MYH8P13535 1937 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms