RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MYL10Q9BUA6 226 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 KAT14Q9H8E8 782 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 ELP3Q9H9T3 547 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 AS3MTQ9HBK9 375 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 PICK1Q9NRD5 415 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 SLC12A7Q9Y666 1083 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 ZHX2Q9Y6X8 837 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 STK36Q9NRP7 1315 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 CCDC69A6NI79 296 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 RASSF10A6NK89 507 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 C19orf81C9J6K1 198 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 USP17L10C9JJH3 530 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 WDR46O15213 610 aaKnown RBP12.32□□□□□ -0.44
VPS33A-204ENST00000540669 SLC10A3P09131 477 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 IFNAR1P17181 557 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 VCAM1P19320 739 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 SMARCA1P28370 1054 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 HUNKP57058 714 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 SPP2Q13103 211 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 MTMR2Q13614 643 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 SPRYD7Q5W111 196 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 CATIPQ7Z7H3 387 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 NBPF11Q86T75 865 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 MICU3Q86XE3 530 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 FANCBQ8NB91 859 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 NSUN7Q8NE18 718 aaKnown RBP12.32□□□□□ -0.44
VPS33A-204ENST00000540669 OPTNQ96CV9 577 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 INTS4Q96HW7 963 aaKnown RBP12.32□□□□□ -0.44
VPS33A-204ENST00000540669 SPZ1Q9BXG8 430 aa12.32□□□□□ -0.44
VPS33A-204ENST00000540669 BAZ2BQ9UIF8 2168 aaKnown RBP12.32□□□□□ -0.44
VPS33A-204ENST00000540669 GOLGA8AA7E2F4 631 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 CYTH3O43739 400 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 RXRAP19793 462 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 DDIT3P35638 169 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 USP14P54578 494 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 DGKZQ13574 1117 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 GPATCH4Q5T3I0 446 aaKnown RBP12.31□□□□□ -0.44
VPS33A-204ENST00000540669 STAG2Q8N3U4 1231 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 PROCA1Q8NCQ7 364 aaPredicted RBP12.31□□□□□ -0.44
VPS33A-204ENST00000540669 CCDC102AQ96A19 550 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 LARP6Q9BRS8 491 aaKnown RBP12.31□□□□□ -0.44
VPS33A-204ENST00000540669 LLPHQ9BRT6 129 aaKnown RBP12.31□□□□□ -0.44
VPS33A-204ENST00000540669 RIOX1Q9H6W3 641 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 NCOA5Q9HCD5 579 aaKnown RBP12.31□□□□□ -0.44
VPS33A-204ENST00000540669 GOPCQ9HD26 462 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 RBM28Q9NW13 759 aaKnown RBP12.31□□□□□ -0.44
VPS33A-204ENST00000540669 MYPNQ86TC9 1320 aa12.31□□□□□ -0.44
VPS33A-204ENST00000540669 CEP350Q5VT06 3117 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 PLEKHA8P1O95397 391 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 HOXA7P31268 230 aaPredicted RBP12.3□□□□□ -0.44
VPS33A-204ENST00000540669 METAP2P50579 478 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS33A-204ENST00000540669 HTRA3P83110 453 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 RTN1Q16799 776 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 SLFN13Q68D06 897 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 GPAT2Q6NUI2 795 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 USP17L2Q6R6M4 530 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 OTUD5Q96G74 571 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 ADAMTS5Q9UNA0 930 aa12.3□□□□□ -0.44
VPS33A-204ENST00000540669 SMCHD1A6NHR9 2005 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 TRIM75PA6NK02 468 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 FDPSP14324 419 aaKnown RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 KIF5BP33176 963 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 ADD1P35611 737 aaKnown RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 ZNF157P51786 506 aaPredicted RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 HMGCS2P54868 508 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 MAP2K1Q02750 393 aaPredicted RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 RGMBQ6NW40 437 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 POTEEQ6S8J3 1075 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 LBX2Q6XYB7 198 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 NFXL1Q6ZNB6 911 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 RAB11FIP4Q86YS3 637 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 HSCBQ8IWL3 235 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 REM2Q8IYK8 340 aaPredicted RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 SRBD1Q8N5C6 995 aaKnown RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 NECAB1Q8N987 351 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 CAPNS2Q96L46 248 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 LZTS2Q9BRK4 669 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 RNF26Q9BY78 433 aaPredicted RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 SLC45A1Q9Y2W3 748 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 ZNF236Q9UL36 1845 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 ADGRA2Q96PE1 1338 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 WDR33Q9C0J8 1336 aaKnown RBP12.29□□□□□ -0.44
VPS33A-204ENST00000540669 LCTP09848 1927 aa12.29□□□□□ -0.44
VPS33A-204ENST00000540669 CCDC196A0A1B0GTZ2 297 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 PARP1P09874 1014 aaKnown RBP12.28□□□□□ -0.44
VPS33A-204ENST00000540669 BMP3P12645 472 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 GNAQP50148 359 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 FGD1P98174 961 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 NOGQ13253 232 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 SNAPC2Q13487 334 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 FAM83BQ5T0W9 1011 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 NOL8Q76FK4 1167 aaKnown RBP12.28□□□□□ -0.44
VPS33A-204ENST00000540669 RGS22Q8NE09 1264 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 REPS2Q8NFH8 660 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 CTCFLQ8NI51 663 aaPredicted RBP12.28□□□□□ -0.44
VPS33A-204ENST00000540669 BRI3BPQ8WY22 251 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 SHISA4Q96DD7 197 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 SLC10A4Q96EP9 437 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 NUP88Q99567 741 aaPredicted RBP12.28□□□□□ -0.44
VPS33A-204ENST00000540669 FEZ1Q99689 392 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms