RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CBX8Q9HC52 389 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 DDX4Q9NQI0 724 aaKnown RBP11.05□□□□□ -0.64
CLIP1-212ENST00000540304 SYKP43405 635 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 NOVP48745 357 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 NPY5RQ15761 445 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 BANK1Q8NDB2 785 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 ZDHHC15Q96MV8 337 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 LZTS2Q9BRK4 669 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 OSBPL5Q9H0X9 879 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-212ENST00000540304 KCNQ5Q9NR82 932 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 NOL7Q9UMY1 257 aaKnown RBP11.05□□□□□ -0.64
CLIP1-212ENST00000540304 R3HCC1Q9Y3T6 440 aaKnown RBP11.05□□□□□ -0.64
CLIP1-212ENST00000540304 PCDHB6Q9Y5E3 794 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 MORC2Q9Y6X9 1032 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-212ENST00000540304 PALM3A6NDB9 673 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-212ENST00000540304 ADCY5O95622 1261 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 TOP1P11387 765 aaKnown RBP11.04□□□□□ -0.64
CLIP1-212ENST00000540304 ZNF165P49910 485 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 NLRP5P59047 1200 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 HDLBPQ00341 1268 aaKnown RBP11.04□□□□□ -0.64
CLIP1-212ENST00000540304 KIAA2012Q0VF49 1180 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 LUZP1Q86V48 1076 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 PIBF1Q8WXW3 757 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 TNFRSF25Q93038 417 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 CEP95Q96GE4 821 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 CLIC6Q96NY7 704 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 SH3GLB2Q9NR46 395 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 ANO10Q9NW15 660 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 CCDC39Q9UFE4 941 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 SWAP70Q9UH65 585 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 FBXO2Q9UK22 296 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-212ENST00000540304 MYO3BQ8WXR4 1341 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 TRIM75PA6NK02 468 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 PTPREP23469 700 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 CALML3P27482 149 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 AOC3Q16853 763 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 KIAA0825Q8IV33 1275 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 SERPINB13Q9UIV8 391 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 MTMR7Q9Y216 660 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 PSME4Q14997 1843 aa11.04□□□□□ -0.64
CLIP1-212ENST00000540304 FAM205CA6NFA0 338 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 HLA-DOAP06340 250 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 EARS2Q5JPH6 523 aaKnown RBP11.03□□□□□ -0.64
CLIP1-212ENST00000540304 ZSCAN30Q86W11 494 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 ZNF579Q8NAF0 562 aaKnown RBP11.03□□□□□ -0.64
CLIP1-212ENST00000540304 PDGFDQ9GZP0 370 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-212ENST00000540304 KIAA1468Q9P260 1216 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 AP5Z1O43299 807 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 BMP15O95972 392 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 PARP1P09874 1014 aaKnown RBP11.03□□□□□ -0.64
CLIP1-212ENST00000540304 ATP2B1P20020 1258 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 DEFB132Q7Z7B7 95 aa11.03□□□□□ -0.64
CLIP1-212ENST00000540304 SRPRBQ9Y5M8 271 aaKnown RBP11.03□□□□□ -0.64
CLIP1-212ENST00000540304 GREB1LQ9C091 1923 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-212ENST00000540304 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-212ENST00000540304 C11orf57Q6ZUT1 292 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-212ENST00000540304 RASGRP2Q7LDG7 609 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 FAM177A1Q8N128 213 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-212ENST00000540304 SPZ1Q9BXG8 430 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 EHD4Q9H223 541 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 KCNH3Q9ULD8 1083 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 IGKV6D-41A0A0C4DH26 115 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 KLRF2D3W0D1 207 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 PPIP5K2O43314 1243 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 CYTH3O43739 400 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 C21orf2O43822 256 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 AKR1B1P15121 316 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 VEGFAP15692 232 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-212ENST00000540304 TRAPPC10P48553 1259 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 NFIAQ12857 509 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 ZRSR1Q15695 479 aaKnown RBP11.02□□□□□ -0.65
CLIP1-212ENST00000540304 SLC35G1Q2M3R5 365 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 CCDC148Q8NFR7 591 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 MTMR4Q9NYA4 1195 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 SERPINA10Q9UK55 444 aa11.02□□□□□ -0.65
CLIP1-212ENST00000540304 SIPA1L1O43166 1804 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 KIF13BQ9NQT8 1826 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 GOLGA8HP0CJ92 632 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 SMARCA1P28370 1054 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 HOXD11P31277 338 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-212ENST00000540304 SHMT1P34896 483 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 RBM5P52756 815 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLIP1-212ENST00000540304 CCDC93Q567U6 631 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 TTC38Q5R3I4 469 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 CEP57L1Q8IYX8 460 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 BLIDQ8IZY5 108 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 TTLL6Q8N841 843 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 SLC16A10Q8TF71 515 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 GPKOWQ92917 476 aaPredicted RBP eCLIP11.01□□□□□ -0.65
CLIP1-212ENST00000540304 NAT10Q9H0A0 1025 aaKnown RBP11.01□□□□□ -0.65
CLIP1-212ENST00000540304 PCDHA4Q9UN74 947 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 IQCB1Q15051 598 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 WWC2Q6AWC2 1192 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 GALNT17Q6IS24 598 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 PIK3AP1Q6ZUJ8 805 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 RTKN2Q8IZC4 609 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 FBXO41Q8TF61 875 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 IDI2Q9BXS1 227 aa11.01□□□□□ -0.65
CLIP1-212ENST00000540304 DHX36Q9H2U1 1008 aaKnown RBP11.01□□□□□ -0.65
CLIP1-212ENST00000540304 BARHL2Q9NY43 387 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms