RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 ATP2B2Q01814 1243 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 GPATCH4Q5T3I0 446 aaKnown RBP12.38□□□□□ -0.43
LEMD3-202ENST00000539442 SIAH1Q8IUQ4 282 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 TRIM22Q8IYM9 498 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 FAM184AQ8NB25 1140 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 RGS22Q8NE09 1264 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.38□□□□□ -0.43
LEMD3-202ENST00000539442 DCAF4Q8WV16 495 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 RNF26Q9BY78 433 aaPredicted RBP12.38□□□□□ -0.43
LEMD3-202ENST00000539442 GLIS2Q9BZE0 524 aaPredicted RBP12.38□□□□□ -0.43
LEMD3-202ENST00000539442 RBM27Q9P2N5 1060 aaKnown RBP12.38□□□□□ -0.43
LEMD3-202ENST00000539442 MAD2L2Q9UI95 211 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 TMX2Q9Y320 296 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 PALM3A6NDB9 673 aaPredicted RBP12.37□□□□□ -0.43
LEMD3-202ENST00000539442 USP17L5A8MUK1 530 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 USP2O75604 605 aaPredicted RBP12.37□□□□□ -0.43
LEMD3-202ENST00000539442 FMNL1O95466 1100 aaPredicted RBP12.37□□□□□ -0.43
LEMD3-202ENST00000539442 IREB2P48200 963 aaKnown RBP12.37□□□□□ -0.43
LEMD3-202ENST00000539442 MAP3K9P80192 1104 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 SSRP1Q08945 709 aaKnown RBP12.37□□□□□ -0.43
LEMD3-202ENST00000539442 MAP3K11Q16584 847 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 NBPF11Q86T75 865 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 WASF1Q92558 559 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 GMCL1Q96IK5 515 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 AS3MTQ9HBK9 375 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 GOPCQ9HD26 462 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 NMRK2Q9NPI5 230 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 PICK1Q9NRD5 415 aa12.37□□□□□ -0.43
LEMD3-202ENST00000539442 ORC3Q9UBD5 711 aaPredicted RBP12.37□□□□□ -0.43
LEMD3-202ENST00000539442 DOCK1Q14185 1865 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 A0A1W2PRG0 241 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 UNCXA6NJT0 531 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 F5H6K3 240 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 PLEKHA8P1O95397 391 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 DEXIO95424 95 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 FDPSP14324 419 aaKnown RBP12.36□□□□□ -0.43
LEMD3-202ENST00000539442 AKAP17AQ02040 695 aaKnown RBP12.36□□□□□ -0.43
LEMD3-202ENST00000539442 KLRC3Q07444 240 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 ZNF543Q08ER8 600 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 FUT2Q10981 343 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 MAP1SQ66K74 1059 aaPredicted RBP12.36□□□□□ -0.43
LEMD3-202ENST00000539442 SLFN13Q68D06 897 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 SRBD1Q8N5C6 995 aaKnown RBP12.36□□□□□ -0.43
LEMD3-202ENST00000539442 DDX11Q96FC9 970 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 WDR18Q9BV38 432 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 SPZ1Q9BXG8 430 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.36□□□□□ -0.43
LEMD3-202ENST00000539442 POLR2AP24928 1970 aaKnown RBP12.36□□□□□ -0.43
LEMD3-202ENST00000539442 CNTNAP5Q8WYK1 1306 aa12.36□□□□□ -0.43
LEMD3-202ENST00000539442 KLRF2D3W0D1 207 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 PRPF3O43395 683 aaKnown RBP12.35□□□□□ -0.43
LEMD3-202ENST00000539442 STX6O43752 255 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 NDUFB10O96000 172 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 PTPRAP18433 802 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 SYT1P21579 422 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 ECE1P42892 770 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 SLC1A4P43007 532 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 FKBP1BP68106 108 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 LARP1BQ659C4 914 aaKnown RBP12.35□□□□□ -0.43
LEMD3-202ENST00000539442 USP17L2Q6R6M4 530 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 ARMC9Q7Z3E5 817 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 ANKRD13AQ8IZ07 590 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 STAG2Q8N3U4 1231 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 ACER1Q8TDN7 264 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 PHKBQ93100 1093 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 ZKSCAN4Q969J2 545 aaPredicted RBP12.35□□□□□ -0.43
LEMD3-202ENST00000539442 FEZ1Q99689 392 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 SLC26A6Q9BXS9 759 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 KIAA1683Q9H0B3 1180 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 VCPKMTQ9H867 229 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 MTMR7Q9Y216 660 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 CSADQ9Y600 493 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 MYH4Q9Y623 1939 aa12.35□□□□□ -0.43
LEMD3-202ENST00000539442 WDR33Q9C0J8 1336 aaKnown RBP12.35□□□□□ -0.43
LEMD3-202ENST00000539442 ATAD5Q96QE3 1844 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 PAPPA2Q9BXP8 1791 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 USP17L10C9JJH3 530 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 BRD1O95696 1058 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 USP14P54578 494 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 PRKG1Q13976 671 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 VGLL4Q14135 290 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 CCDC96Q2M329 555 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 DLK2Q6UY11 383 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.34□□□□□ -0.43
LEMD3-202ENST00000539442 ZNF526Q8TF50 670 aaPredicted RBP12.34□□□□□ -0.43
LEMD3-202ENST00000539442 LPAR1Q92633 364 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 HS3ST6Q96QI5 342 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 SNCAIPQ9Y6H5 919 aa12.34□□□□□ -0.43
LEMD3-202ENST00000539442 FRMPD2Q68DX3 1309 aaPredicted RBP12.34□□□□□ -0.43
LEMD3-202ENST00000539442 GOLGA8HP0CJ92 632 aa12.33□□□□□ -0.44
LEMD3-202ENST00000539442 BMP3P12645 472 aa12.33□□□□□ -0.44
LEMD3-202ENST00000539442 TTLL12Q14166 644 aaPredicted RBP12.33□□□□□ -0.44
LEMD3-202ENST00000539442 RASGRP2Q7LDG7 609 aa12.33□□□□□ -0.44
LEMD3-202ENST00000539442 FAM177A1Q8N128 213 aaPredicted RBP12.33□□□□□ -0.44
LEMD3-202ENST00000539442 CMTR1Q8N1G2 835 aaKnown RBP12.33□□□□□ -0.44
LEMD3-202ENST00000539442 CCDC82Q8N4S0 544 aa12.33□□□□□ -0.44
LEMD3-202ENST00000539442 ZNF280CQ8ND82 737 aa12.33□□□□□ -0.44
LEMD3-202ENST00000539442 C8orf76Q96K31 380 aa12.33□□□□□ -0.44
LEMD3-202ENST00000539442 ALG1Q9BT22 464 aa12.33□□□□□ -0.44
LEMD3-202ENST00000539442 RIOX1Q9H6W3 641 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms