RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 RIMS2Q9UQ26 1411 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 KRT40Q6A162 431 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 CCDC13Q8IYE1 715 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 PLBD2Q8NHP8 589 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 LSM14BQ9BX40 385 aaKnown RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 PALMDQ9NP74 551 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 GPHNQ9NQX3 736 aaPredicted RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 WDR46O15213 610 aaKnown RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 GUCY2FP51841 1108 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 ARHGAP44Q17R89 818 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 MCTP2Q6DN12 878 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 GPIHBP1Q8IV16 184 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 AZI2Q9H6S1 392 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 TFCP2L1Q9NZI6 479 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 ABCC10Q5T3U5 1492 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 ARHGAP42A6NI28 874 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 P4HA1P13674 534 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 CDC37L1Q7L3B6 337 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 CTAGE3PQ8IX95 158 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 RIOK1Q9BRS2 568 aaKnown RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 BLZF1Q9H2G9 400 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 HOMER3Q9NSC5 361 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 FAM207AQ9NSI2 230 aaPredicted RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 TTLL3Q9Y4R7 772 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 GADD45BO75293 160 aaPredicted RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 DNM2P50570 870 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 C2CD5Q86YS7 1000 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 FAM227BQ96M60 508 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 JPH2Q9BR39 696 aaPredicted RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 FAN1Q9Y2M0 1017 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 POLE2P56282 527 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 TRMT44Q8IYL2 757 aaKnown RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 PHKBQ93100 1093 aa10.94□□□□□ -0.66
COL4A6-208ENST00000538570 METTL22Q9BUU2 404 aaPredicted RBP10.94□□□□□ -0.66
COL4A6-208ENST00000538570 SGSM2O43147 1006 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 CTDSPL2Q05D32 466 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 U2AF1L4Q8WU68 220 aaKnown RBP10.93□□□□□ -0.66
COL4A6-208ENST00000538570 DBNDD2Q9BQY9 259 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 RIC8AQ9NPQ8 531 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 IBTKQ9P2D0 1353 aaPredicted RBP10.93□□□□□ -0.66
COL4A6-208ENST00000538570 CLTAP09496 248 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 PNOCQ13519 176 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 PPP2R5EQ16537 467 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 NCAPGQ9BPX3 1015 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 Q9H521 79 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 RAB20Q9NX57 234 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 TCOF1Q13428 1488 aaKnown RBP10.93□□□□□ -0.66
COL4A6-208ENST00000538570 EIF2AK4Q9P2K8 1649 aaKnown RBP10.93□□□□□ -0.66
COL4A6-208ENST00000538570 CCT5P48643 541 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 PARP10Q53GL7 1025 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 XPO4Q9C0E2 1151 aaKnown RBP10.93□□□□□ -0.66
COL4A6-208ENST00000538570 NT5C3AQ9H0P0 336 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 HYOU1Q9Y4L1 999 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 KDM3AQ9Y4C1 1321 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 ZBED4O75132 1171 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 KRT3P12035 628 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 RAD51AP2Q09MP3 1159 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 HAUS8Q9BT25 410 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 NLRC4Q9NPP4 1024 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 GINS2Q9Y248 185 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 PDE8AO60658 829 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 ADKP55263 362 aaKnown RBP10.93□□□□□ -0.66
COL4A6-208ENST00000538570 BSPRYQ5W0U4 402 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 AATFQ9NY61 560 aaKnown RBP eCLIP10.93□□□□□ -0.66
COL4A6-208ENST00000538570 KCNG1Q9UIX4 513 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 NUB1Q9Y5A7 615 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 ABCC1P33527 1531 aa10.93□□□□□ -0.66
COL4A6-208ENST00000538570 KRIT1O00522 736 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 STAT1P42224 750 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 SLC1A4P43007 532 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 FAM71BQ8TC56 605 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 FAM89AQ96GI7 184 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 GDAP1L1Q96MZ0 367 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 MYL10Q9BUA6 226 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 PLEKHA4Q9H4M7 779 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KCNJ14Q9UNX9 436 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 PIK3C2GO75747 1445 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KRT81Q14533 505 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 E2F5Q15329 346 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 NXNQ6DKJ4 435 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 LARSQ9P2J5 1176 aaKnown RBP10.92□□□□□ -0.66
COL4A6-208ENST00000538570 ZNF215Q9UL58 517 aaPredicted RBP10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KCNK3O14649 394 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 PRDM1O75626 825 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 TNNI1P19237 187 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 USH1GQ495M9 461 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 BIN2Q9UBW5 565 aaPredicted RBP10.92□□□□□ -0.66
COL4A6-208ENST00000538570 SERTAD1Q9UHV2 236 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 NPATQ14207 1427 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KBTBD3Q8NAB2 608 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 TSC22D3Q99576 134 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 GGA1Q9UJY5 639 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 MAPKBP1O60336 1514 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KIAA0556O60303 1618 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KCNJ18B7U540 433 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KIF11P52732 1056 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 SESN3P58005 492 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 KCNJ12Q14500 433 aa10.92□□□□□ -0.66
COL4A6-208ENST00000538570 ZYXQ15942 572 aaKnown RBP10.92□□□□□ -0.66
COL4A6-208ENST00000538570 TRAPPC3LQ5T215 181 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms