RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 GRIN3BO60391 1043 aa23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 XBP1P17861 261 aa23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 U2AF2P26368 475 aaKnown RBP eCLIP23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 DPY19L2Q6NUT2 758 aa23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 DIS3L2Q8IYB7 885 aaKnown RBP23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 DDX49Q9Y6V7 483 aaKnown RBP23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 CEBPZQ03701 1054 aaKnown RBP23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 GNL2Q13823 731 aaKnown RBP23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 CCDC96Q2M329 555 aa23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 KCTD1Q719H9 257 aa23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 GPKOWQ92917 476 aaPredicted RBP eCLIP23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 USP28Q96RU2 1077 aa23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 PHF20Q9BVI0 1012 aa23.47■■□□□ 1.35
TNFRSF1A-205ENST00000534885 ECE1P42892 770 aa23.46■■□□□ 1.35
TNFRSF1A-205ENST00000534885 MYSM1Q5VVJ2 828 aa23.46■■□□□ 1.35
TNFRSF1A-205ENST00000534885 TTBK2Q6IQ55 1244 aa23.46■■□□□ 1.35
TNFRSF1A-205ENST00000534885 GPT2Q8TD30 523 aa23.46■■□□□ 1.35
TNFRSF1A-205ENST00000534885 OXER1Q8TDS5 423 aa23.46■■□□□ 1.35
TNFRSF1A-205ENST00000534885 VAT1LQ9HCJ6 419 aa23.46■■□□□ 1.35
TNFRSF1A-205ENST00000534885 F5H6K3 240 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 SMARCA1P28370 1054 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 KLRC3Q07444 240 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 NR5A1Q13285 461 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 SAFBQ15424 915 aaKnown RBP eCLIP23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 SKOR2Q2VWA4 1001 aaPredicted RBP23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 SLFN13Q68D06 897 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 HOMER1Q86YM7 354 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 ACER1Q8TDN7 264 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 RIOX1Q9H6W3 641 aa23.45■■□□□ 1.35
TNFRSF1A-205ENST00000534885 GPATCH4Q5T3I0 446 aaKnown RBP23.45■■□□□ 1.34
TNFRSF1A-205ENST00000534885 CCDC84Q86UT8 332 aaPredicted RBP23.45■■□□□ 1.34
TNFRSF1A-205ENST00000534885 LEO1Q8WVC0 666 aaPredicted RBP23.45■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SPATA32Q96LK8 384 aa23.45■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SCAND2PQ9GZW5 306 aaPredicted RBP23.45■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SLC1A4P43007 532 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 NPY5RQ15761 445 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 GMCL1P1Q8NEA9 526 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 L3MBTL3Q96JM7 780 aaPredicted RBP23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 CFAP45Q9UL16 551 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 NDUFB10O96000 172 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ASNSP08243 561 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SLC16A2P36021 539 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 KLHL40Q2TBA0 621 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 TPRNQ4KMQ1 711 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 WWC2Q6AWC2 1192 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 TYW1BQ6NUM6 668 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 NOSTRINQ8IVI9 506 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ZNF396Q96N95 335 aaPredicted RBP23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 PIGSQ96S52 555 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ARHGEF10LQ9HCE6 1279 aa23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ISY1Q9ULR0 285 aaKnown RBP23.44■■□□□ 1.34
TNFRSF1A-205ENST00000534885 CSPP1Q1MSJ5 1256 aa23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 HEATR3Q7Z4Q2 680 aa23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 DCAF4Q8WV16 495 aa23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 RRP36Q96EU6 259 aaKnown RBP23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 NUP88Q99567 741 aaPredicted RBP23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 FOXP1Q9H334 677 aaPredicted RBP23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 FZD1Q9UP38 647 aa23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 PITPNM2Q9BZ72 1349 aa23.43■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ATL3Q6DD88 541 aa23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 TMX2Q9Y320 296 aa23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ELP1O95163 1332 aa23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ADGRF4Q8IZF3 695 aa23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 GMCL1Q96IK5 515 aa23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 GLIS2Q9BZE0 524 aaPredicted RBP23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 GZF1Q9H116 711 aaPredicted RBP23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 PPP2R3BQ9Y5P8 575 aa23.42■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ZC3H4Q9UPT8 1303 aaKnown RBP23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SSC5DA1L4H1 1573 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 GLTPD2A6NH11 291 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 INPP5BP32019 993 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 NLRP5P59047 1200 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 KIAA1755Q5JYT7 1200 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 DCAF15Q66K64 600 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 DLK2Q6UY11 383 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SPICE1Q8N0Z3 855 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 JMJD4Q9H9V9 463 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 BARHL2Q9NY43 387 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SEC63Q9UGP8 760 aaKnown RBP23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SYNPO2Q9UMS6 1093 aa23.41■■□□□ 1.34
TNFRSF1A-205ENST00000534885 STXBP3O00186 592 aa23.4■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ADAMTS3O15072 1205 aa23.4■■□□□ 1.34
TNFRSF1A-205ENST00000534885 KRT2P35908 639 aa23.4■■□□□ 1.34
TNFRSF1A-205ENST00000534885 UBE2HP62256 183 aa23.4■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SH3GLB2Q9NR46 395 aa23.4■■□□□ 1.34
TNFRSF1A-205ENST00000534885 CLIC4Q9Y696 253 aa23.4■■□□□ 1.34
TNFRSF1A-205ENST00000534885 CTNND1O60716 968 aaKnown RBP23.4■■□□□ 1.34
TNFRSF1A-205ENST00000534885 ZNF341Q9BYN7 854 aa23.39■■□□□ 1.34
TNFRSF1A-205ENST00000534885 RTEL1Q9NZ71 1219 aa23.39■■□□□ 1.34
TNFRSF1A-205ENST00000534885 RCOR1Q9UKL0 485 aa23.39■■□□□ 1.34
TNFRSF1A-205ENST00000534885 SOCS7O14512 581 aa23.39■■□□□ 1.33
TNFRSF1A-205ENST00000534885 EPHX2P34913 555 aa23.39■■□□□ 1.33
TNFRSF1A-205ENST00000534885 ZYXQ15942 572 aaKnown RBP23.39■■□□□ 1.33
TNFRSF1A-205ENST00000534885 EARS2Q5JPH6 523 aaKnown RBP23.39■■□□□ 1.33
TNFRSF1A-205ENST00000534885 DCPSQ96C86 337 aaKnown RBP23.39■■□□□ 1.33
TNFRSF1A-205ENST00000534885 DOCK1Q14185 1865 aa23.39■■□□□ 1.33
TNFRSF1A-205ENST00000534885 FAM205CA6NFA0 338 aa23.38■■□□□ 1.33
TNFRSF1A-205ENST00000534885 USP17L10C9JJH3 530 aa23.38■■□□□ 1.33
TNFRSF1A-205ENST00000534885 MBD3O95983 291 aa23.38■■□□□ 1.33
TNFRSF1A-205ENST00000534885 HOOK2Q96ED9 719 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms