RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 COL11A1P12107 1806 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-206ENST00000531480 SPDYE16A6NNV3 312 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-206ENST00000531480 HMGB1P09429 215 aaKnown RBP16.99■□□□□ 0.31
CPSF1-206ENST00000531480 ANAPC15P60006 121 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 IRX3P78415 501 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-206ENST00000531480 COG2Q14746 738 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 FAM83BQ5T0W9 1011 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 SLFN13Q68D06 897 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 FBXL16Q8N461 479 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 DCAF4Q8WV16 495 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 TMEM87BQ96K49 555 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 MORF4L1Q9UBU8 362 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 MGAMO43451 1857 aa16.99■□□□□ 0.31
CPSF1-206ENST00000531480 PRC1O43663 620 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 PDHBP11177 359 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 BMP3P12645 472 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 DSG3P32926 999 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 LIFRP42702 1097 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 SART3Q15020 963 aaKnown RBP16.98■□□□□ 0.31
CPSF1-206ENST00000531480 FAM110CQ1W6H9 321 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 DHX32Q7L7V1 743 aaKnown RBP16.98■□□□□ 0.31
CPSF1-206ENST00000531480 PNMA1Q8ND90 353 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 TM6SF1Q9BZW5 370 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 LY9Q9HBG7 655 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 HOXC10Q9NYD6 342 aa16.98■□□□□ 0.31
CPSF1-206ENST00000531480 CCDC85CA6NKD9 419 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 SH2B2O14492 632 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-206ENST00000531480 IFIT3O14879 490 aaKnown RBP16.97■□□□□ 0.31
CPSF1-206ENST00000531480 MCCP23508 829 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 SLC1A4P43007 532 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 IFIT1BQ5T764 474 aaKnown RBP16.97■□□□□ 0.31
CPSF1-206ENST00000531480 BTNL9Q6UXG8 535 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 CHST3Q7LGC8 479 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 SGMS1Q86VZ5 419 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 SMCR8Q8TEV9 937 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-206ENST00000531480 ZNF296Q8WUU4 475 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-206ENST00000531480 NUP88Q99567 741 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-206ENST00000531480 AGXT2Q9BYV1 514 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 TANGO6Q9C0B7 1094 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 MCOLN1Q9GZU1 580 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 KAT14Q9H8E8 782 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 SENP2Q9HC62 589 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 RBPJLQ9UBG7 517 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 PPP1R9AQ9ULJ8 1098 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 RABGAP1Q9Y3P9 1069 aa16.97■□□□□ 0.31
CPSF1-206ENST00000531480 CNMDO75829 334 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 FLOT1O75955 427 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 PSMA5P28066 241 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 SP3Q02447 781 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 TROAPQ12815 778 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 WTAPQ15007 396 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 TMEM67Q5HYA8 995 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 RASGRP2Q7LDG7 609 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 TMTC2Q8N394 836 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 MB21D1Q8N884 522 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 REPS2Q8NFH8 660 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 ZSWIM6Q9HCJ5 1215 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 TXNRD2Q9NNW7 524 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 FBXO28Q9NVF7 368 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 CPA4Q9UI42 421 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 FEM1BQ9UK73 627 aa16.96■□□□□ 0.31
CPSF1-206ENST00000531480 ERICH2A1L162 156 aa16.95■□□□□ 0.3
CPSF1-206ENST00000531480 FKTNO75072 461 aa16.95■□□□□ 0.3
CPSF1-206ENST00000531480 ZNF543Q08ER8 600 aa16.95■□□□□ 0.3
CPSF1-206ENST00000531480 PRPF38AQ8NAV1 312 aaKnown RBP16.95■□□□□ 0.3
CPSF1-206ENST00000531480 JAKMIP1Q96N16 626 aaKnown RBP16.95■□□□□ 0.3
CPSF1-206ENST00000531480 MAP3K14Q99558 947 aa16.95■□□□□ 0.3
CPSF1-206ENST00000531480 SLF1Q9BQI6 1058 aa16.95■□□□□ 0.3
CPSF1-206ENST00000531480 ZSWIM8A7E2V4 1837 aa16.95■□□□□ 0.3
CPSF1-206ENST00000531480 VWA5AO00534 786 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 FDX1P10109 184 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 RPS6KB1P23443 525 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 STAT2P52630 851 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 LACTBP83111 547 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-206ENST00000531480 CAP1Q01518 475 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 GPATCH4Q5T3I0 446 aaKnown RBP16.94■□□□□ 0.3
CPSF1-206ENST00000531480 FAM160B2Q86V87 743 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 ANKRD13CQ8N6S4 541 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 CHURC1Q8WUH1 139 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 ATG4CQ96DT6 458 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 GPHNQ9NQX3 736 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-206ENST00000531480 BTBD7Q9P203 1132 aa16.94■□□□□ 0.3
CPSF1-206ENST00000531480 DOCK3Q8IZD9 2030 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 TMEM232C9JQI7 657 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 ATP2A1O14983 1001 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 RAD21O60216 631 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 ERVK-9P63128 1117 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 ERVK-24P63145 666 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 Q3C1V9 767 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 ASPRV1Q53RT3 343 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 BLOC1S2Q6QNY1 142 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 KCTD1Q719H9 257 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 RUFY3Q7L099 469 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 GPRC5AQ8NFJ5 357 aa16.93■□□□□ 0.3
CPSF1-206ENST00000531480 PALM3A6NDB9 673 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-206ENST00000531480 DDAH1O94760 285 aa16.92■□□□□ 0.3
CPSF1-206ENST00000531480 CASTP20810 708 aaKnown RBP16.92■□□□□ 0.3
CPSF1-206ENST00000531480 CTGFP29279 349 aa16.92■□□□□ 0.3
CPSF1-206ENST00000531480 RBM25P49756 843 aaKnown RBP16.92■□□□□ 0.3
CPSF1-206ENST00000531480 EVCP57679 992 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms