RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	DEK	P35659	375 aa	Known RBP	7.52	□□□□□ -1.21
CD44-231	ENST00000531110	SLC23A3	Q6PIS1	610 aa		7.52	□□□□□ -1.21
CD44-231	ENST00000531110	ZNF655	Q8N720	491 aa	Predicted RBP	7.52	□□□□□ -1.21
CD44-231	ENST00000531110	UBE2F	Q969M7	185 aa		7.52	□□□□□ -1.21
CD44-231	ENST00000531110	HDAC8	Q9BY41	377 aa		7.52	□□□□□ -1.21
CD44-231	ENST00000531110	ZNF408	Q9H9D4	720 aa		7.52	□□□□□ -1.21
CD44-231	ENST00000531110	ATP13A1	Q9HD20	1204 aa		7.52	□□□□□ -1.21
CD44-231	ENST00000531110		A0A087WZG4	1122 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	TPP2	P29144	1249 aa	Predicted RBP	7.51	□□□□□ -1.21
CD44-231	ENST00000531110	ZNF143	P52747	638 aa	Predicted RBP	7.51	□□□□□ -1.21
CD44-231	ENST00000531110	SLC7A5	Q01650	507 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	BNIP3	Q12983	259 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	IKZF1	Q13422	519 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	NCAPH	Q15003	741 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	PPFIBP1	Q86W92	1011 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	TP53INP2	Q8IXH6	220 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	CCDC144CP	Q8IYA2	1237 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	CCDC120	Q96HB5	630 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	ACTR10	Q9NZ32	417 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	ZSWIM5	Q9P217	1185 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110	MYO15B	Q96JP2	1530 aa		7.51	□□□□□ -1.21
CD44-231	ENST00000531110		C9IYK1	514 aa		7.5	□□□□□ -1.21
CD44-231	ENST00000531110	SMAD7	O15105	426 aa	Known RBP	7.5	□□□□□ -1.21
CD44-231	ENST00000531110	SHOX	O15266	292 aa		7.5	□□□□□ -1.21
CD44-231	ENST00000531110	RBM10	P98175	930 aa	Known RBP	7.5	□□□□□ -1.21
CD44-231	ENST00000531110	NBPF6	Q5VWK0	638 aa		7.5	□□□□□ -1.21
CD44-231	ENST00000531110	ZNF574	Q6ZN55	896 aa	Predicted RBP	7.5	□□□□□ -1.21
CD44-231	ENST00000531110	NBPF4	Q96M43	638 aa		7.5	□□□□□ -1.21
CD44-231	ENST00000531110	PRDM14	Q9GZV8	571 aa		7.5	□□□□□ -1.21
CD44-231	ENST00000531110	LOC100996750	A0A140TA64	210 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	ESR1	P03372	595 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	ENDOU	P21128	410 aa	Known RBP	7.49	□□□□□ -1.21
CD44-231	ENST00000531110	ETFB	P38117	255 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	PPP2R5E	Q16537	467 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	CLEC16A	Q2KHT3	1053 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	AXDND1	Q5T1B0	1012 aa	Predicted RBP	7.49	□□□□□ -1.21
CD44-231	ENST00000531110	CBLL1	Q75N03	491 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	ZNF512B	Q96KM6	892 aa	Predicted RBP	7.49	□□□□□ -1.21
CD44-231	ENST00000531110	KRTAP4-6	Q9BYQ5	205 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	TANGO6	Q9C0B7	1094 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	DUSP13	Q9UII6	198 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	FHOD1	Q9Y613	1164 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	MRVI1	Q9Y6F6	885 aa		7.49	□□□□□ -1.21
CD44-231	ENST00000531110	SHISA3	A0PJX4	238 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	NAT2	P11245	290 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	ATP2B1	P20020	1258 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	ZP2	Q05996	745 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	PLCL1	Q15111	1095 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	TCEAL1	Q15170	157 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	FXN	Q16595	210 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	GNPTAB	Q3T906	1256 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	RNF111	Q6ZNA4	994 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	ABI1	Q8IZP0	508 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	KLHL6	Q8WZ60	621 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	NAP1L5	Q96NT1	182 aa	Predicted RBP	7.48	□□□□□ -1.21
CD44-231	ENST00000531110	HAUS7	Q99871	368 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	CHST7	Q9NS84	486 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	WHRN	Q9P202	907 aa		7.48	□□□□□ -1.21
CD44-231	ENST00000531110	OAS3	Q9Y6K5	1087 aa	Known RBP	7.48	□□□□□ -1.21
CD44-231	ENST00000531110	FAM86C2P	A6NEL3	165 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	CBFA2T2	O43439	604 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	PRAMEF1	O95521	474 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	CD247	P20963	164 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	VHLL	Q6RSH7	139 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	TMC3	Q7Z5M5	1100 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	LINC00116	Q8NCU8	138 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	PI4K2B	Q8TCG2	481 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	HIRIP3	Q9BW71	556 aa	Predicted RBP	7.47	□□□□□ -1.21
CD44-231	ENST00000531110	KLHL25	Q9H0H3	589 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	GBP3	Q9H0R5	595 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	GP6	Q9HCN6	339 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	ZNF281	Q9Y2X9	895 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	SHROOM4	Q9ULL8	1493 aa		7.47	□□□□□ -1.21
CD44-231	ENST00000531110	KLF4	O43474	513 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	STK10	O94804	968 aa	Known RBP	7.46	□□□□□ -1.22
CD44-231	ENST00000531110	GSN	P06396	782 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	ITGA4	P13612	1032 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	BMP8B	P34820	402 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	CD96	P40200	585 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	SNW1	Q13573	536 aa	Known RBP	7.46	□□□□□ -1.22
CD44-231	ENST00000531110	TDRD10	Q5VZ19	366 aa	Known RBP	7.46	□□□□□ -1.22
CD44-231	ENST00000531110	DCAF15	Q66K64	600 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	CREG2	Q8IUH2	290 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	SREK1	Q8WXA9	508 aa	Known RBP	7.46	□□□□□ -1.22
CD44-231	ENST00000531110	ALPK1	Q96QP1	1244 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	CARS2	Q9HA77	564 aa	Known RBP	7.46	□□□□□ -1.22
CD44-231	ENST00000531110	ADGRE2	Q9UHX3	823 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	FBXL21	Q9UKT6	434 aa		7.46	□□□□□ -1.22
CD44-231	ENST00000531110	R3HCC1	Q9Y3T6	440 aa	Known RBP	7.46	□□□□□ -1.22
CD44-231	ENST00000531110	ANKRD34B	A5PLL1	514 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	NCL	P19338	710 aa	Known RBP	7.45	□□□□□ -1.22
CD44-231	ENST00000531110	LTK	P29376	864 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	PCBP3	P57721	371 aa	Known RBP	7.45	□□□□□ -1.22
CD44-231	ENST00000531110	RBL2	Q08999	1139 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	ZNF792	Q3KQV3	632 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	HEATR6	Q6AI08	1181 aa	Known RBP	7.45	□□□□□ -1.22
CD44-231	ENST00000531110	ANKS3	Q6ZW76	656 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	CKAP2L	Q8IYA6	745 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	TCTN2	Q96GX1	697 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	RCC1L	Q96I51	464 aa	Known RBP	7.45	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms