RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PAXIP1Q6ZW49 1069 aaPredicted RBP24.56■■□□□ 1.52
VPS28-212ENST00000530836 LZTS2Q9BRK4 669 aa24.56■■□□□ 1.52
VPS28-212ENST00000530836 TTLL1O95922 423 aa24.55■■□□□ 1.52
VPS28-212ENST00000530836 ECE1P42892 770 aa24.55■■□□□ 1.52
VPS28-212ENST00000530836 GRM4Q14833 912 aa24.55■■□□□ 1.52
VPS28-212ENST00000530836 CAPNS2Q96L46 248 aa24.55■■□□□ 1.52
VPS28-212ENST00000530836 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.55■■□□□ 1.52
VPS28-212ENST00000530836 SNCAIPQ9Y6H5 919 aa24.55■■□□□ 1.52
VPS28-212ENST00000530836 PRPF3O43395 683 aaKnown RBP24.54■■□□□ 1.52
VPS28-212ENST00000530836 VEGFBP49765 207 aa24.54■■□□□ 1.52
VPS28-212ENST00000530836 RRP1BQ14684 758 aaKnown RBP24.54■■□□□ 1.52
VPS28-212ENST00000530836 ELP3Q9H9T3 547 aa24.54■■□□□ 1.52
VPS28-212ENST00000530836 SIPA1L1O43166 1804 aa24.54■■□□□ 1.52
VPS28-212ENST00000530836 FAM155AB1AL88 458 aaPredicted RBP24.53■■□□□ 1.52
VPS28-212ENST00000530836 SLC10A3P09131 477 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 CAP2P40123 477 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 FUT2Q10981 343 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 RESTQ13127 1097 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 RASAL3Q86YV0 1011 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 SCYL3Q8IZE3 742 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.53■■□□□ 1.52
VPS28-212ENST00000530836 PPFIA3O75145 1194 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 XBP1P17861 261 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 ATL3Q6DD88 541 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 TMEM179Q6ZVK1 233 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 KANSL2Q9H9L4 492 aa24.53■■□□□ 1.52
VPS28-212ENST00000530836 MPHOSPH10O00566 681 aaKnown RBP24.52■■□□□ 1.52
VPS28-212ENST00000530836 KRT85P78386 507 aa24.52■■□□□ 1.52
VPS28-212ENST00000530836 FERMT3Q86UX7 667 aa24.52■■□□□ 1.52
VPS28-212ENST00000530836 TMEM87AQ8NBN3 555 aa24.52■■□□□ 1.52
VPS28-212ENST00000530836 SMARCA1P28370 1054 aa24.51■■□□□ 1.51
VPS28-212ENST00000530836 GRM1Q13255 1194 aa24.51■■□□□ 1.51
VPS28-212ENST00000530836 ERO1BQ86YB8 467 aa24.51■■□□□ 1.51
VPS28-212ENST00000530836 PICK1Q9NRD5 415 aa24.51■■□□□ 1.51
VPS28-212ENST00000530836 SPDYE5A6NIY4 337 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 PLEKHA8P1O95397 391 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 SPRYD7Q5W111 196 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 BRAPQ7Z569 592 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 OPTNQ96CV9 577 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 WNK4Q96J92 1243 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 CABP5Q9NP86 173 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 LMBRD1Q9NUN5 540 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 GREB1LQ9C091 1923 aaPredicted RBP24.5■■□□□ 1.51
VPS28-212ENST00000530836 PALM3A6NDB9 673 aaPredicted RBP24.5■■□□□ 1.51
VPS28-212ENST00000530836 TRAK2O60296 914 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 PTPRAP18433 802 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 ABCB5Q2M3G0 1257 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 CCDC82Q8N4S0 544 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 SRBD1Q8N5C6 995 aaKnown RBP24.5■■□□□ 1.51
VPS28-212ENST00000530836 CNKSR2Q8WXI2 1034 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 GINM1Q9NU53 330 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 NYAP2Q9P242 653 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 MAD2L2Q9UI95 211 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 CFAP45Q9UL16 551 aa24.5■■□□□ 1.51
VPS28-212ENST00000530836 PRPF40AO75400 957 aaKnown RBP24.49■■□□□ 1.51
VPS28-212ENST00000530836 PARP1P09874 1014 aaKnown RBP24.49■■□□□ 1.51
VPS28-212ENST00000530836 ZBTB48P10074 688 aaPredicted RBP24.49■■□□□ 1.51
VPS28-212ENST00000530836 GJA5P36382 358 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 JAG1P78504 1218 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 DNM1Q05193 864 aaKnown RBP24.49■■□□□ 1.51
VPS28-212ENST00000530836 PPATQ06203 517 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 NOGQ13253 232 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 KRT40Q6A162 431 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 MKL1Q969V6 931 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 SCAND2PQ9GZW5 306 aaPredicted RBP24.49■■□□□ 1.51
VPS28-212ENST00000530836 CLIP2Q9UDT6 1046 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 SYNPO2Q9UMS6 1093 aa24.49■■□□□ 1.51
VPS28-212ENST00000530836 CNTNAP5Q8WYK1 1306 aa24.48■■□□□ 1.51
VPS28-212ENST00000530836 GDF11O95390 407 aa24.48■■□□□ 1.51
VPS28-212ENST00000530836 ASNSP08243 561 aa24.48■■□□□ 1.51
VPS28-212ENST00000530836 NCLP19338 710 aaKnown RBP24.48■■□□□ 1.51
VPS28-212ENST00000530836 FOSBP53539 338 aa24.48■■□□□ 1.51
VPS28-212ENST00000530836 GUCY1B3Q02153 619 aa24.48■■□□□ 1.51
VPS28-212ENST00000530836 SAFBQ15424 915 aaKnown RBP eCLIP24.48■■□□□ 1.51
VPS28-212ENST00000530836 FOXD4L6Q3SYB3 417 aaPredicted RBP24.48■■□□□ 1.51
VPS28-212ENST00000530836 FOXD4L3Q6VB84 417 aaPredicted RBP24.48■■□□□ 1.51
VPS28-212ENST00000530836 CMTR1Q8N1G2 835 aaKnown RBP24.48■■□□□ 1.51
VPS28-212ENST00000530836 V9GY48 417 aaPredicted RBP24.48■■□□□ 1.51
VPS28-212ENST00000530836 AOC2O75106 756 aa24.47■■□□□ 1.51
VPS28-212ENST00000530836 ASPRV1Q53RT3 343 aa24.47■■□□□ 1.51
VPS28-212ENST00000530836 OTUD5Q96G74 571 aa24.47■■□□□ 1.51
VPS28-212ENST00000530836 ZNF396Q96N95 335 aaPredicted RBP24.47■■□□□ 1.51
VPS28-212ENST00000530836 SNHG28P0DPA3 235 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 MAP2K2P36507 400 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 MKRN3Q13064 507 aaKnown RBP24.46■■□□□ 1.51
VPS28-212ENST00000530836 SHROOM1Q2M3G4 852 aaPredicted RBP24.46■■□□□ 1.51
VPS28-212ENST00000530836 FAM177A1Q8N128 213 aaPredicted RBP24.46■■□□□ 1.51
VPS28-212ENST00000530836 AIFM3Q96NN9 605 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 SPZ1Q9BXG8 430 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 CNPY2Q9Y2B0 182 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 ZHX2Q9Y6X8 837 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 GH2P01242 217 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 KIF23Q02241 960 aaPredicted RBP24.46■■□□□ 1.51
VPS28-212ENST00000530836 PPIL2Q13356 520 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 ZIC5Q96T25 663 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.46■■□□□ 1.51
VPS28-212ENST00000530836 ZBTB21Q9ULJ3 1066 aa24.46■■□□□ 1.51
VPS28-212ENST00000530836 OTOFQ9HC10 1997 aa24.45■■□□□ 1.5
VPS28-212ENST00000530836 KLRF2D3W0D1 207 aa24.45■■□□□ 1.5
VPS28-212ENST00000530836 MMP1P03956 469 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms