RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 BAG3O95817 575 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 PBX1P40424 430 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 DMTNQ08495 405 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 IGSF22Q8N9C0 903 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 MNS1Q8NEH6 495 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 PRDM10Q9NQV6 1147 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 PARP3Q9Y6F1 533 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 ROBO3Q96MS0 1386 aa24.06■■□□□ 1.44
VPS28-205ENST00000526204 H2AFXP16104 143 aaPredicted RBP24.05■■□□□ 1.44
VPS28-205ENST00000526204 CASQ1P31415 396 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 GALNT17Q6IS24 598 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 TOGARAM2Q6ZUX3 1019 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 FAM177A1Q8N128 213 aaPredicted RBP24.05■■□□□ 1.44
VPS28-205ENST00000526204 IL17RBQ9NRM6 502 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 TCP11L1Q9NUJ3 509 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 NPHP1O15259 732 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 TEX33O43247 280 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 TPM1P09493 284 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 GRM4Q14833 912 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 UBXN4Q92575 508 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 MKNK2Q9HBH9 465 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 ANKIB1Q9P2G1 1089 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 RWDD2AQ9UIY3 292 aa24.05■■□□□ 1.44
VPS28-205ENST00000526204 VEGFAP15692 232 aaPredicted RBP24.04■■□□□ 1.44
VPS28-205ENST00000526204 GNG11P61952 73 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 SPAG1Q07617 926 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 IL17AQ16552 155 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 C4orf32Q8N8J7 132 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 LRRC10BA6NIK2 292 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 EFCAB8A8MWE9 144 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 CCDC175P0C221 793 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 PPP4CP60510 307 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 CERS3Q8IU89 383 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 SMYD4Q8IYR2 804 aaPredicted RBP24.04■■□□□ 1.44
VPS28-205ENST00000526204 CCDC24Q8N4L8 307 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 CCDC148Q8NFR7 591 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 ARHGEF1Q92888 912 aaKnown RBP24.04■■□□□ 1.44
VPS28-205ENST00000526204 CCDC51Q96ER9 411 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 ITIH6Q6UXX5 1313 aa24.04■■□□□ 1.44
VPS28-205ENST00000526204 CCDC88AQ3V6T2 1871 aa24.03■■□□□ 1.44
VPS28-205ENST00000526204 LDHCP07864 332 aa24.03■■□□□ 1.44
VPS28-205ENST00000526204 ZNF658Q5TYW1 1059 aaPredicted RBP24.03■■□□□ 1.44
VPS28-205ENST00000526204 RRAGBQ5VZM2 374 aa24.03■■□□□ 1.44
VPS28-205ENST00000526204 CCNL1Q9UK58 526 aaPredicted RBP24.03■■□□□ 1.44
VPS28-205ENST00000526204 CTNND2Q9UQB3 1225 aa24.03■■□□□ 1.44
VPS28-205ENST00000526204 JAG2Q9Y219 1238 aa24.03■■□□□ 1.44
VPS28-205ENST00000526204 FANCGO15287 622 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 RBL2Q08999 1139 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 GRAPQ13588 217 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 ARHGAP29Q52LW3 1261 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 CNGA4Q8IV77 575 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 KRT222Q8N1A0 295 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 DAGLBQ8NCG7 672 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 GRAPLQ8TC17 118 aaPredicted RBP24.02■■□□□ 1.44
VPS28-205ENST00000526204 STAMQ92783 540 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 BLZF1Q9H2G9 400 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 LIMA1Q9UHB6 759 aaKnown RBP24.02■■□□□ 1.44
VPS28-205ENST00000526204 PAK1Q13153 545 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 PTF1AQ7RTS3 328 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 ZNF804AQ7Z570 1209 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 ZNF444Q8N0Y2 327 aaPredicted RBP24.02■■□□□ 1.44
VPS28-205ENST00000526204 LRRN4CLQ8ND94 238 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 ANKRD20A12PQ8NF67 263 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 SH3RF3Q8TEJ3 882 aaPredicted RBP24.02■■□□□ 1.44
VPS28-205ENST00000526204 LZTS2Q9BRK4 669 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 ZNF287Q9HBT7 754 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 FAM53CQ9NYF3 392 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 MAD2L2Q9UI95 211 aa24.02■■□□□ 1.44
VPS28-205ENST00000526204 CCDC194A0A1B0GVG4 234 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 M0R2N6 131 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 TSPY3P0CV98 308 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 TSPY8P0CW00 308 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 MAP3K9P80192 1104 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 STAG2Q8N3U4 1231 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 MTRQ99707 1265 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 MFAP3LO75121 409 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 RPN1P04843 607 aaKnown RBP24.01■■□□□ 1.43
VPS28-205ENST00000526204 SEMA3FQ13275 785 aa24.01■■□□□ 1.43
VPS28-205ENST00000526204 C15orf52Q6ZUT6 534 aaKnown RBP24.01■■□□□ 1.43
VPS28-205ENST00000526204 GPKOWQ92917 476 aaPredicted RBP eCLIP24.01■■□□□ 1.43
VPS28-205ENST00000526204 ARGLU1Q9NWB6 273 aaPredicted RBP24.01■■□□□ 1.43
VPS28-205ENST00000526204 TADA3O75528 432 aa24■■□□□ 1.43
VPS28-205ENST00000526204 STAT6P42226 847 aa24■■□□□ 1.43
VPS28-205ENST00000526204 DTHD1Q6ZMT9 781 aa24■■□□□ 1.43
VPS28-205ENST00000526204 DYNLL2Q96FJ2 89 aa24■■□□□ 1.43
VPS28-205ENST00000526204 WDR24Q96S15 920 aa24■■□□□ 1.43
VPS28-205ENST00000526204 FAM205AQ6ZU69 1335 aa24■■□□□ 1.43
VPS28-205ENST00000526204 LAD1O00515 517 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 ADAMTS3O15072 1205 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 MYL1P05976 194 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 NGLY1Q96IV0 654 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 BMS1Q14692 1282 aaKnown RBP23.99■■□□□ 1.43
VPS28-205ENST00000526204 KRT31Q15323 416 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 SLC4A8Q2Y0W8 1093 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 CARD6Q9BX69 1037 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 DISC1Q9NRI5 854 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 BARHL2Q9NY43 387 aa23.99■■□□□ 1.43
VPS28-205ENST00000526204 SOWAHDA6NJG2 315 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 FECHP22830 423 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 RFC4P35249 363 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms