RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 DDX60Q8IY21 1712 aaKnown RBP6.13□□□□□ -1.43
CD44-218ENST00000525469 SIPA1L3O60292 1781 aaPredicted RBP6.13□□□□□ -1.43
CD44-218ENST00000525469 MANSC4A6NHS7 340 aaPredicted RBP6.13□□□□□ -1.43
CD44-218ENST00000525469 BTBD11A6QL63 1104 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 YDJCA8MPS7 323 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 CLGNO14967 610 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 BBOX1O75936 387 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 ATG7O95352 703 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 HMOX1P09601 288 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 SNRPA1P09661 255 aaKnown RBP6.13□□□□□ -1.43
CD44-218ENST00000525469 MCM5P33992 734 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 HLFQ16534 295 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 ANGEL2Q5VTE6 544 aaKnown RBP6.13□□□□□ -1.43
CD44-218ENST00000525469 MOB2Q70IA6 237 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 ARMC9Q7Z3E5 817 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 PPP1R42Q7Z4L9 355 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 MORC1Q86VD1 984 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 SP8Q8IXZ3 490 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 DEFB123Q8N688 67 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 ZNF333Q96JL9 665 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 PNMA5Q96PV4 448 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 PRDM6Q9NQX0 595 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 STXBP5LQ9Y2K9 1186 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 ABCC12Q96J65 1359 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 RIC1Q4ADV7 1423 aa6.13□□□□□ -1.43
CD44-218ENST00000525469 GNAT3A8MTJ3 354 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 ADARB2-AS1A8MUL3 147 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 PTMAP06454 111 aaKnown RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 GPTP24298 496 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 MSNP26038 577 aaKnown RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 IL13P35225 146 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 DGKGP49619 791 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 RBM25P49756 843 aaKnown RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 GSK3AP49840 483 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 SP3Q02447 781 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 SFSWAPQ12872 951 aaKnown RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 SKOR2Q2VWA4 1001 aaPredicted RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 KIF6Q6ZMV9 814 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 C1orf229Q6ZS94 237 aaPredicted RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 KDM3BQ7LBC6 1761 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 FCHSD1Q86WN1 690 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 CREBRFQ8IUR6 639 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.12□□□□□ -1.43
CD44-218ENST00000525469 NGEFQ8N5V2 710 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 TNFRSF25Q93038 417 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 MYO19Q96H55 970 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 DNAJC2Q99543 621 aaKnown RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 DBNDD1Q9H9R9 158 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 C11orf16Q9NQ32 467 aa6.12□□□□□ -1.43
CD44-218ENST00000525469 RRAGDQ9NQL2 400 aaPredicted RBP6.12□□□□□ -1.43
CD44-218ENST00000525469 ANKRD36CQ5JPF3 1778 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 ABCC4O15439 1325 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.11□□□□□ -1.43
CD44-218ENST00000525469 CCDC66A2RUB6 948 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 ERVV-1B6SEH8 477 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 ECE2O60344 883 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 ARID4AP29374 1257 aaPredicted RBP6.11□□□□□ -1.43
CD44-218ENST00000525469 ARSDP51689 593 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 SNRPNP63162 240 aaKnown RBP6.11□□□□□ -1.43
CD44-218ENST00000525469 PCSK7Q16549 785 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 C11orf91Q3C1V1 193 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 DDX46Q7L014 1031 aaKnown RBP6.11□□□□□ -1.43
CD44-218ENST00000525469 TMC4Q7Z404 712 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 SLC51AQ86UW1 340 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 ZNF280CQ8ND82 737 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 EYA3Q99504 573 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 LAMB2P55268 1798 aa6.11□□□□□ -1.43
CD44-218ENST00000525469 IBTKQ9P2D0 1353 aaPredicted RBP6.1□□□□□ -1.43
CD44-218ENST00000525469 ASTN2O75129 1339 aaPredicted RBP6.1□□□□□ -1.43
CD44-218ENST00000525469 FSD2A1L4K1 749 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 WTIPA6NIX2 430 aaPredicted RBP6.1□□□□□ -1.43
CD44-218ENST00000525469 SOX1O00570 391 aaPredicted RBP6.1□□□□□ -1.43
CD44-218ENST00000525469 OFD1O75665 1012 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 MFAP1P55081 439 aaKnown RBP6.1□□□□□ -1.43
CD44-218ENST00000525469 CCDC173Q0VFZ6 552 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 PRKG1Q13976 671 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 GRIN2CQ14957 1233 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 PRAMEF18Q5VWM3 479 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 SUSD4Q5VX71 490 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 IL17REQ8NFR9 667 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 BHMTQ93088 406 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 COL26A1Q96A83 441 aa6.1□□□□□ -1.43
CD44-218ENST00000525469 CCDC94Q9BW85 323 aaPredicted RBP6.1□□□□□ -1.43
CD44-218ENST00000525469 SCN9AQ15858 1988 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 BRCA2P51587 3418 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 ZNF609O15014 1411 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 MAP3K15Q6ZN16 1313 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 KCNQ3O43525 872 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 LGR5O75473 907 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 WDHD1O75717 1129 aaPredicted RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 VIL1P09327 827 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 ADH7P40394 386 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 RGS3P49796 1198 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 IDH3AP50213 366 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 IRX6P78412 446 aaPredicted RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 HMGN5P82970 282 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 PTPN12Q05209 780 aaKnown RBP6.09□□□□□ -1.43
CD44-218ENST00000525469 CRHR2Q13324 411 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 GRAPQ13588 217 aa6.09□□□□□ -1.43
CD44-218ENST00000525469 CCINQ13939 588 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms